miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24943 3' -60.1 NC_005284.1 + 46484 0.66 0.490552
Target:  5'- gGCGUUaGCUGCucgugcauggccgACGCCGCaCGgGACg -3'
miRNA:   3'- -UGCAGcUGACG-------------UGCGGCGcGCgCUGa -5'
24943 3' -60.1 NC_005284.1 + 15937 0.66 0.491546
Target:  5'- gGCGUUc-CUG-ACGUCgGCGCGCGACg -3'
miRNA:   3'- -UGCAGcuGACgUGCGG-CGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 21607 0.73 0.181508
Target:  5'- aGCGUUGGgcaagauCUcGCGCGCCGCGCuCGACg -3'
miRNA:   3'- -UGCAGCU-------GA-CGUGCGGCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 48418 0.68 0.354121
Target:  5'- -aGUUGGCUGCGaagacgcgccaauCGCCGCGUGCa--- -3'
miRNA:   3'- ugCAGCUGACGU-------------GCGGCGCGCGcuga -5'
24943 3' -60.1 NC_005284.1 + 15450 0.78 0.072419
Target:  5'- gGCGUgcaCGACUGCuACGCgauCGUGCGCGACUg -3'
miRNA:   3'- -UGCA---GCUGACG-UGCG---GCGCGCGCUGA- -5'
24943 3' -60.1 NC_005284.1 + 35153 0.73 0.177287
Target:  5'- -gGUCGGCuccguUGUAUGCCGUGUGCGAUc -3'
miRNA:   3'- ugCAGCUG-----ACGUGCGGCGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9586 0.66 0.443093
Target:  5'- aGCGcagggCGAUcGCGCuGCCGCG-GCGGCg -3'
miRNA:   3'- -UGCa----GCUGaCGUG-CGGCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 27540 0.69 0.315735
Target:  5'- cGCGggguUCGGCUaUugGCCGCGUGCG-CUg -3'
miRNA:   3'- -UGC----AGCUGAcGugCGGCGCGCGCuGA- -5'
24943 3' -60.1 NC_005284.1 + 18477 0.69 0.329461
Target:  5'- cGCG-CGGgUGCGCGCCGagaacgcgcucgGCGUGACg -3'
miRNA:   3'- -UGCaGCUgACGUGCGGCg-----------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9913 0.68 0.338854
Target:  5'- aGCGUCG-CU-CGCGCuCGCGCagcaGCGGCg -3'
miRNA:   3'- -UGCAGCuGAcGUGCG-GCGCG----CGCUGa -5'
24943 3' -60.1 NC_005284.1 + 31429 0.68 0.338854
Target:  5'- cGCGggCGAC-GUGCGCCGC-UGCGGCg -3'
miRNA:   3'- -UGCa-GCUGaCGUGCGGCGcGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 32796 0.68 0.346829
Target:  5'- uGCGUCGGcCUGCGCggGuuGCGgGgCGGCg -3'
miRNA:   3'- -UGCAGCU-GACGUG--CggCGCgC-GCUGa -5'
24943 3' -60.1 NC_005284.1 + 15884 0.68 0.346829
Target:  5'- uCGUCGACcGCagagGCGgUGCGCGCG-CUa -3'
miRNA:   3'- uGCAGCUGaCG----UGCgGCGCGCGCuGA- -5'
24943 3' -60.1 NC_005284.1 + 14384 0.71 0.235245
Target:  5'- -gGUCGACUGCACGgaaauCgGCGC-CGACa -3'
miRNA:   3'- ugCAGCUGACGUGC-----GgCGCGcGCUGa -5'
24943 3' -60.1 NC_005284.1 + 11172 0.69 0.293826
Target:  5'- cGCGcCG-CgGC-CGCCGCGCGCGGa- -3'
miRNA:   3'- -UGCaGCuGaCGuGCGGCGCGCGCUga -5'
24943 3' -60.1 NC_005284.1 + 6531 0.71 0.229378
Target:  5'- -aGUCGACgaagGCGCuCagGCGCGCGACa -3'
miRNA:   3'- ugCAGCUGa---CGUGcGg-CGCGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 9238 0.71 0.218016
Target:  5'- gGCGcUGAC-GCGCGCgGCGgGCGGCa -3'
miRNA:   3'- -UGCaGCUGaCGUGCGgCGCgCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 14944 0.72 0.206077
Target:  5'- aACGUCGAUUuggcgugaauaacGCGCGCCGUucggcggcuuccuGUGCGACa -3'
miRNA:   3'- -UGCAGCUGA-------------CGUGCGGCG-------------CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 36866 0.7 0.289589
Target:  5'- cGCcUCGGCUGCACGCaguucguucuccuucUGCuGCGCGAUc -3'
miRNA:   3'- -UGcAGCUGACGUGCG---------------GCG-CGCGCUGa -5'
24943 3' -60.1 NC_005284.1 + 10385 0.66 0.440271
Target:  5'- -aG-CGGCUGCgcacgaagcaagagGCGUCGCGgGCGGCc -3'
miRNA:   3'- ugCaGCUGACG--------------UGCGGCGCgCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.