Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24943 | 3' | -60.1 | NC_005284.1 | + | 35153 | 0.73 | 0.177287 |
Target: 5'- -gGUCGGCuccguUGUAUGCCGUGUGCGAUc -3' miRNA: 3'- ugCAGCUG-----ACGUGCGGCGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 51644 | 0.73 | 0.159568 |
Target: 5'- uGC-UCGGCUGUAUGUgaaucacgCGCGCGCGACg -3' miRNA: 3'- -UGcAGCUGACGUGCG--------GCGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 27540 | 0.69 | 0.315735 |
Target: 5'- cGCGggguUCGGCUaUugGCCGCGUGCG-CUg -3' miRNA: 3'- -UGC----AGCUGAcGugCGGCGCGCGCuGA- -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 18477 | 0.69 | 0.329461 |
Target: 5'- cGCG-CGGgUGCGCGCCGagaacgcgcucgGCGUGACg -3' miRNA: 3'- -UGCaGCUgACGUGCGGCg-----------CGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 47565 | 0.67 | 0.424476 |
Target: 5'- uGC-UCGACUGCugcaugGCgGUGCGUGACg -3' miRNA: 3'- -UGcAGCUGACGug----CGgCGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 39687 | 0.67 | 0.424476 |
Target: 5'- uGC-UCGACaaGCGCGCCGCGagGCaGACg -3' miRNA: 3'- -UGcAGCUGa-CGUGCGGCGCg-CG-CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 11801 | 0.67 | 0.415345 |
Target: 5'- cACGgccgaGGCggaGCAgGUCGCGCGCGAg- -3' miRNA: 3'- -UGCag---CUGa--CGUgCGGCGCGCGCUga -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 21777 | 0.67 | 0.415345 |
Target: 5'- -aG-CGGCUGCGCGUCGCuGUcCGACa -3' miRNA: 3'- ugCaGCUGACGUGCGGCG-CGcGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 30409 | 0.67 | 0.406335 |
Target: 5'- cAUGUCGAUcGUcCG-CGUGCGCGACg -3' miRNA: 3'- -UGCAGCUGaCGuGCgGCGCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 956 | 0.67 | 0.406335 |
Target: 5'- gUGcCGAggUGUACGCCG-GCGCGACg -3' miRNA: 3'- uGCaGCUg-ACGUGCGGCgCGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 37108 | 0.67 | 0.397448 |
Target: 5'- gGCGUCG-C-GCACGaUCGCGCGCagguaGACg -3' miRNA: 3'- -UGCAGCuGaCGUGC-GGCGCGCG-----CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 53686 | 0.68 | 0.380055 |
Target: 5'- uCGUCGACggGCACGgCaaGUGCGCuGGCg -3' miRNA: 3'- uGCAGCUGa-CGUGCgG--CGCGCG-CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 7540 | 0.68 | 0.370709 |
Target: 5'- aACGaCGAagggcaaaacauuCUGCGUGCCGCGCguGCGACg -3' miRNA: 3'- -UGCaGCU-------------GACGUGCGGCGCG--CGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 21558 | 0.68 | 0.363179 |
Target: 5'- uUGcCGACgaGCAgGCCGCGCG-GGCg -3' miRNA: 3'- uGCaGCUGa-CGUgCGGCGCGCgCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 38957 | 0.68 | 0.358218 |
Target: 5'- uCGUCGACcuucgUGCGCgaugcugauccgcggGCUGCGCGCuGGCg -3' miRNA: 3'- uGCAGCUG-----ACGUG---------------CGGCGCGCG-CUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 48418 | 0.68 | 0.354121 |
Target: 5'- -aGUUGGCUGCGaagacgcgccaauCGCCGCGUGCa--- -3' miRNA: 3'- ugCAGCUGACGU-------------GCGGCGCGCGcuga -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 15884 | 0.68 | 0.346829 |
Target: 5'- uCGUCGACcGCagagGCGgUGCGCGCG-CUa -3' miRNA: 3'- uGCAGCUGaCG----UGCgGCGCGCGCuGA- -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 32796 | 0.68 | 0.346829 |
Target: 5'- uGCGUCGGcCUGCGCggGuuGCGgGgCGGCg -3' miRNA: 3'- -UGCAGCU-GACGUG--CggCGCgC-GCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 31429 | 0.68 | 0.338854 |
Target: 5'- cGCGggCGAC-GUGCGCCGC-UGCGGCg -3' miRNA: 3'- -UGCa-GCUGaCGUGCGGCGcGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 9913 | 0.68 | 0.338854 |
Target: 5'- aGCGUCG-CU-CGCGCuCGCGCagcaGCGGCg -3' miRNA: 3'- -UGCAGCuGAcGUGCG-GCGCG----CGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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