Results 81 - 89 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24943 | 3' | -60.1 | NC_005284.1 | + | 27540 | 0.69 | 0.315735 |
Target: 5'- cGCGggguUCGGCUaUugGCCGCGUGCG-CUg -3' miRNA: 3'- -UGC----AGCUGAcGugCGGCGCGCGCuGA- -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 18477 | 0.69 | 0.329461 |
Target: 5'- cGCG-CGGgUGCGCGCCGagaacgcgcucgGCGUGACg -3' miRNA: 3'- -UGCaGCUgACGUGCGGCg-----------CGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 9913 | 0.68 | 0.338854 |
Target: 5'- aGCGUCG-CU-CGCGCuCGCGCagcaGCGGCg -3' miRNA: 3'- -UGCAGCuGAcGUGCG-GCGCG----CGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 31429 | 0.68 | 0.338854 |
Target: 5'- cGCGggCGAC-GUGCGCCGC-UGCGGCg -3' miRNA: 3'- -UGCa-GCUGaCGUGCGGCGcGCGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 32796 | 0.68 | 0.346829 |
Target: 5'- uGCGUCGGcCUGCGCggGuuGCGgGgCGGCg -3' miRNA: 3'- -UGCAGCU-GACGUG--CggCGCgC-GCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 15884 | 0.68 | 0.346829 |
Target: 5'- uCGUCGACcGCagagGCGgUGCGCGCG-CUa -3' miRNA: 3'- uGCAGCUGaCG----UGCgGCGCGCGCuGA- -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 48418 | 0.68 | 0.354121 |
Target: 5'- -aGUUGGCUGCGaagacgcgccaauCGCCGCGUGCa--- -3' miRNA: 3'- ugCAGCUGACGU-------------GCGGCGCGCGcuga -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 16692 | 0.68 | 0.354938 |
Target: 5'- gGCGUCGGCgUGC-CGCUGaCGUcCGACg -3' miRNA: 3'- -UGCAGCUG-ACGuGCGGC-GCGcGCUGa -5' |
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24943 | 3' | -60.1 | NC_005284.1 | + | 10385 | 0.66 | 0.440271 |
Target: 5'- -aG-CGGCUGCgcacgaagcaagagGCGUCGCGgGCGGCc -3' miRNA: 3'- ugCaGCUGACG--------------UGCGGCGCgCGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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