Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24944 | 3' | -54.8 | NC_005284.1 | + | 31466 | 1.06 | 0.001743 |
Target: 5'- cAAUUGACCGCCGUGCCGCCGGAAAAGc -3' miRNA: 3'- -UUAACUGGCGGCACGGCGGCCUUUUC- -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 22027 | 0.66 | 0.737127 |
Target: 5'- ---cGACCGgCGUGCgUGCgGGAAc-- -3' miRNA: 3'- uuaaCUGGCgGCACG-GCGgCCUUuuc -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 49885 | 0.66 | 0.715625 |
Target: 5'- ---gGAagGCCG-GCCGCCGGGGc-- -3' miRNA: 3'- uuaaCUggCGGCaCGGCGGCCUUuuc -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 10945 | 0.67 | 0.63831 |
Target: 5'- --aUGGCCgGCCucGUCGCCGGAcGAGc -3' miRNA: 3'- uuaACUGG-CGGcaCGGCGGCCUuUUC- -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 21390 | 0.68 | 0.560655 |
Target: 5'- --gUGACUGCUggcggucgaGUGCUGCCGGGu--- -3' miRNA: 3'- uuaACUGGCGG---------CACGGCGGCCUuuuc -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 43826 | 0.7 | 0.496237 |
Target: 5'- ---gGACCGCCGUGC-GCCGaucGAAGc -3' miRNA: 3'- uuaaCUGGCGGCACGgCGGCcu-UUUC- -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 17866 | 0.7 | 0.455195 |
Target: 5'- ---cGACCcaaagaagGCCG-GCCGCCGGAucGGc -3' miRNA: 3'- uuaaCUGG--------CGGCaCGGCGGCCUuuUC- -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 12485 | 0.66 | 0.726425 |
Target: 5'- ---aGAucCCGCCGuUGCgCGCCGGcGAAu -3' miRNA: 3'- uuaaCU--GGCGGC-ACG-GCGGCCuUUUc -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 49516 | 0.66 | 0.715625 |
Target: 5'- --gUGGCCgGUCGagGUCGCCGGAu--- -3' miRNA: 3'- uuaACUGG-CGGCa-CGGCGGCCUuuuc -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 41076 | 0.66 | 0.704741 |
Target: 5'- ---cGAUCGCCGUuccaGCaauGCCGGggGGa -3' miRNA: 3'- uuaaCUGGCGGCA----CGg--CGGCCuuUUc -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 10261 | 0.67 | 0.627155 |
Target: 5'- ---cGACCGCCGccaGCaaGCCGGAAc-- -3' miRNA: 3'- uuaaCUGGCGGCa--CGg-CGGCCUUuuc -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 21869 | 0.69 | 0.549728 |
Target: 5'- ---cGGCUGCCGUGCaguGUCGGAc--- -3' miRNA: 3'- uuaaCUGGCGGCACGg--CGGCCUuuuc -5' |
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24944 | 3' | -54.8 | NC_005284.1 | + | 14736 | 0.69 | 0.528082 |
Target: 5'- ---gGuCCGCCGUcggauuGCCgGCCGGAAAAu -3' miRNA: 3'- uuaaCuGGCGGCA------CGG-CGGCCUUUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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