miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24945 5' -53.4 NC_005284.1 + 15481 0.66 0.816538
Target:  5'- aGUCGCG-CGACGUAgccuCCcgGCUCGaauUCg -3'
miRNA:   3'- -CGGCGUaGCUGUAU----GGuaCGAGCg--AG- -5'
24945 5' -53.4 NC_005284.1 + 9883 0.66 0.816538
Target:  5'- aGCCGCAcagcaggagcUCGAgCGcGCCGaaGCgUCGCUCg -3'
miRNA:   3'- -CGGCGU----------AGCU-GUaUGGUa-CG-AGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 31008 0.66 0.806957
Target:  5'- uGCCGCcgUGcguGCGgaaguUGCCGguugGCUCGCUg -3'
miRNA:   3'- -CGGCGuaGC---UGU-----AUGGUa---CGAGCGAg -5'
24945 5' -53.4 NC_005284.1 + 21496 0.66 0.806957
Target:  5'- gGCCGCGcugcUUGGCAUggcgGCCGgcGCUUGCgUCg -3'
miRNA:   3'- -CGGCGU----AGCUGUA----UGGUa-CGAGCG-AG- -5'
24945 5' -53.4 NC_005284.1 + 45442 0.66 0.806957
Target:  5'- cGCgGCGUCGcgauugucggGCG-ACCAguUGCUCGCg- -3'
miRNA:   3'- -CGgCGUAGC----------UGUaUGGU--ACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 33280 0.66 0.806957
Target:  5'- uGCCGCG-CGuGCuucuUGCCAUGCaucccgcaacCGCUCg -3'
miRNA:   3'- -CGGCGUaGC-UGu---AUGGUACGa---------GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 21673 0.66 0.797186
Target:  5'- cGCCGCGUCGGCGgugGCC--GC-CGUc- -3'
miRNA:   3'- -CGGCGUAGCUGUa--UGGuaCGaGCGag -5'
24945 5' -53.4 NC_005284.1 + 45794 0.66 0.797186
Target:  5'- cGCagGCGUCGGCAUGCUcgGCgaaggugucCGCa- -3'
miRNA:   3'- -CGg-CGUAGCUGUAUGGuaCGa--------GCGag -5'
24945 5' -53.4 NC_005284.1 + 10476 0.66 0.797186
Target:  5'- gGCCGCccgCGACGccucuUGCUucGUGCgcagcCGCUCa -3'
miRNA:   3'- -CGGCGua-GCUGU-----AUGG--UACGa----GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 49462 0.66 0.797186
Target:  5'- uGCC-CGUgCGGCGcGCCA-GCUCGCg- -3'
miRNA:   3'- -CGGcGUA-GCUGUaUGGUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 1624 0.66 0.787236
Target:  5'- uGCuCGCGcUCGACAUGgCGcGCaaGCUCg -3'
miRNA:   3'- -CG-GCGU-AGCUGUAUgGUaCGagCGAG- -5'
24945 5' -53.4 NC_005284.1 + 53950 0.66 0.777119
Target:  5'- cGCCGCAUccCGGCc-GCUGUGCUCGa-- -3'
miRNA:   3'- -CGGCGUA--GCUGuaUGGUACGAGCgag -5'
24945 5' -53.4 NC_005284.1 + 15736 0.66 0.777119
Target:  5'- cCCGCGugauUCGGCAcGCCGUuCUUGCUg -3'
miRNA:   3'- cGGCGU----AGCUGUaUGGUAcGAGCGAg -5'
24945 5' -53.4 NC_005284.1 + 16688 0.66 0.777119
Target:  5'- gGCCgGCGUCGGCGUGCCGcUGaCguccgaCGCg- -3'
miRNA:   3'- -CGG-CGUAGCUGUAUGGU-AC-Ga-----GCGag -5'
24945 5' -53.4 NC_005284.1 + 47397 0.67 0.766846
Target:  5'- cCCGCAUCGAuCAguugACgGUucaGCUCGCg- -3'
miRNA:   3'- cGGCGUAGCU-GUa---UGgUA---CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 4550 0.67 0.766846
Target:  5'- cGCCGCcgCGA---GCCA-GCUuuUGCUCg -3'
miRNA:   3'- -CGGCGuaGCUguaUGGUaCGA--GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 30766 0.67 0.75643
Target:  5'- gGCCGgGUaGGCGaGCCAUGCgaUCGCa- -3'
miRNA:   3'- -CGGCgUAgCUGUaUGGUACG--AGCGag -5'
24945 5' -53.4 NC_005284.1 + 39821 0.67 0.75643
Target:  5'- gGCCGCGUgCcGCAUugCAUGggCGCg- -3'
miRNA:   3'- -CGGCGUA-GcUGUAugGUACgaGCGag -5'
24945 5' -53.4 NC_005284.1 + 54654 0.67 0.75643
Target:  5'- aCCGCAguggCGACAgucacgcGCCcUGCUUGCa- -3'
miRNA:   3'- cGGCGUa---GCUGUa------UGGuACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 21948 0.67 0.750115
Target:  5'- cGCUGCGUCGACGUcugauaggcggcggcACCAUcgcccacgccgGCggCGCUg -3'
miRNA:   3'- -CGGCGUAGCUGUA---------------UGGUA-----------CGa-GCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.