miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24945 5' -53.4 NC_005284.1 + 48928 0.67 0.724437
Target:  5'- cGCCGCuuUCGcCucGCgGUGCUCGCa- -3'
miRNA:   3'- -CGGCGu-AGCuGuaUGgUACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 8786 0.67 0.713566
Target:  5'- cGCCGCGUCGAgcgcgcgcacCGUgACC-UGCaCGCUUg -3'
miRNA:   3'- -CGGCGUAGCU----------GUA-UGGuACGaGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 18579 0.67 0.735213
Target:  5'- cGCCGgaAUCGACGUcacGCCGaGCgCGUUCu -3'
miRNA:   3'- -CGGCg-UAGCUGUA---UGGUaCGaGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 30766 0.67 0.75643
Target:  5'- gGCCGgGUaGGCGaGCCAUGCgaUCGCa- -3'
miRNA:   3'- -CGGCgUAgCUGUaUGGUACG--AGCGag -5'
24945 5' -53.4 NC_005284.1 + 9417 0.67 0.724437
Target:  5'- aCgGCAUCGugAaACUcgGCgugUCGCUCg -3'
miRNA:   3'- cGgCGUAGCugUaUGGuaCG---AGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 31572 0.67 0.713566
Target:  5'- gGUCGCAccauUCGAUuuUGCUGUuCUCGCUCa -3'
miRNA:   3'- -CGGCGU----AGCUGu-AUGGUAcGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 48890 0.68 0.702612
Target:  5'- -aCGCGUCGACGggaACCAgucggGCa-GCUCg -3'
miRNA:   3'- cgGCGUAGCUGUa--UGGUa----CGagCGAG- -5'
24945 5' -53.4 NC_005284.1 + 3395 0.68 0.702612
Target:  5'- cGCCGC-UCGGCcUGCacuaucgGCUCGCa- -3'
miRNA:   3'- -CGGCGuAGCUGuAUGgua----CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 38748 0.68 0.67939
Target:  5'- cGCCGCGUCGAC---CCAUGCauaccgucgguaaUUGCg- -3'
miRNA:   3'- -CGGCGUAGCUGuauGGUACG-------------AGCGag -5'
24945 5' -53.4 NC_005284.1 + 23317 0.68 0.669369
Target:  5'- -gCGCAUCGAUAguugcUugCGUGCUCgacacgGCUCc -3'
miRNA:   3'- cgGCGUAGCUGU-----AugGUACGAG------CGAG- -5'
24945 5' -53.4 NC_005284.1 + 23539 0.68 0.702612
Target:  5'- gGUCGCGUUGuGCAUGCCGU-CUUGCcCa -3'
miRNA:   3'- -CGGCGUAGC-UGUAUGGUAcGAGCGaG- -5'
24945 5' -53.4 NC_005284.1 + 8690 0.68 0.6582
Target:  5'- cGCCGCAagCGuGCAggucACgGUGCgcgCGCUCg -3'
miRNA:   3'- -CGGCGUa-GC-UGUa---UGgUACGa--GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 48963 0.68 0.669369
Target:  5'- aCUGCAUCGACGaaGCgGUGCUgCGCg- -3'
miRNA:   3'- cGGCGUAGCUGUa-UGgUACGA-GCGag -5'
24945 5' -53.4 NC_005284.1 + 2186 0.68 0.691586
Target:  5'- gGCCGCGccaugcUUGAaa-AUCAUGCUgGCUCa -3'
miRNA:   3'- -CGGCGU------AGCUguaUGGUACGAgCGAG- -5'
24945 5' -53.4 NC_005284.1 + 8598 0.68 0.699311
Target:  5'- cGCCGCAugcgcggucucucgUCGACG-GCCG-GCUCGUa- -3'
miRNA:   3'- -CGGCGU--------------AGCUGUaUGGUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 36245 0.68 0.702612
Target:  5'- cGCgGUuUUGACGUGCUuuuucaauUGCUCGCUg -3'
miRNA:   3'- -CGgCGuAGCUGUAUGGu-------ACGAGCGAg -5'
24945 5' -53.4 NC_005284.1 + 31948 0.68 0.69048
Target:  5'- aGCCGCGcagcagacgaggcUCGACAUuccuGCCAgucaaGCUUGCg- -3'
miRNA:   3'- -CGGCGU-------------AGCUGUA----UGGUa----CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 21809 0.69 0.613381
Target:  5'- cCCGCAggcugCGACucucugcuUCAUGCUCGUUCc -3'
miRNA:   3'- cGGCGUa----GCUGuau-----GGUACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 10158 0.69 0.647005
Target:  5'- cGCCGCgGUCG-CGgucGCCGcgcguuccGCUCGCUCa -3'
miRNA:   3'- -CGGCG-UAGCuGUa--UGGUa-------CGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 26520 0.69 0.624586
Target:  5'- -aUGCAUCGGCAguucGCCGcGC-CGCUCc -3'
miRNA:   3'- cgGCGUAGCUGUa---UGGUaCGaGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.