miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24945 5' -53.4 NC_005284.1 + 31716 1.11 0.00103
Target:  5'- aGCCGCAUCGACAUACCAUGCUCGCUCc -3'
miRNA:   3'- -CGGCGUAGCUGUAUGGUACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 50012 0.79 0.167459
Target:  5'- cGCCcCA-CGACGUACCGcUGCUUGCUCa -3'
miRNA:   3'- -CGGcGUaGCUGUAUGGU-ACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 8980 0.74 0.367004
Target:  5'- uGUCGCGUCGAgCGguUGCCGUGgUCGCg- -3'
miRNA:   3'- -CGGCGUAGCU-GU--AUGGUACgAGCGag -5'
24945 5' -53.4 NC_005284.1 + 38664 0.74 0.367004
Target:  5'- cGCCGCGugcgcUCGGCcgaacgGCCGU-CUCGCUCg -3'
miRNA:   3'- -CGGCGU-----AGCUGua----UGGUAcGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 17079 0.71 0.525119
Target:  5'- aUCGCGUCGGCGaucgucGCCGUGUgcgCGUUCg -3'
miRNA:   3'- cGGCGUAGCUGUa-----UGGUACGa--GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 26407 0.71 0.503739
Target:  5'- uGCCGCGcUGAagaAUGuCCAUGCUuucCGCUCg -3'
miRNA:   3'- -CGGCGUaGCUg--UAU-GGUACGA---GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 31201 0.71 0.514384
Target:  5'- gGCCGaCcgCGACAUcCCGaagcUGCUCGCa- -3'
miRNA:   3'- -CGGC-GuaGCUGUAuGGU----ACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 11908 0.71 0.525119
Target:  5'- aGCCGCugcUCGAgAUaGCCGcGCUCGCg- -3'
miRNA:   3'- -CGGCGu--AGCUgUA-UGGUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 15179 0.71 0.514384
Target:  5'- gGCCGUGcCGACcgACCAguucgcGCUCGCgUCg -3'
miRNA:   3'- -CGGCGUaGCUGuaUGGUa-----CGAGCG-AG- -5'
24945 5' -53.4 NC_005284.1 + 42106 0.71 0.525119
Target:  5'- uGCCGC-UCGGCcgGCaCGcGCUCGCg- -3'
miRNA:   3'- -CGGCGuAGCUGuaUG-GUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 18731 0.7 0.535938
Target:  5'- cGCagGCGUCGACGUcguAUCAgggGCUCGCg- -3'
miRNA:   3'- -CGg-CGUAGCUGUA---UGGUa--CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 46677 0.7 0.534852
Target:  5'- cGCCGCucgggacguUCGGCGUugcccacugcgccGCCAUGCUCGg-- -3'
miRNA:   3'- -CGGCGu--------AGCUGUA-------------UGGUACGAGCgag -5'
24945 5' -53.4 NC_005284.1 + 23667 0.7 0.579907
Target:  5'- cGCCGCGUCGAUgaACC--GCUcgaccCGCUCc -3'
miRNA:   3'- -CGGCGUAGCUGuaUGGuaCGA-----GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 10053 0.7 0.579907
Target:  5'- cGCCGUauaacgcgcuuuGUCGAuCGUGCCuUGCUuCGCUg -3'
miRNA:   3'- -CGGCG------------UAGCU-GUAUGGuACGA-GCGAg -5'
24945 5' -53.4 NC_005284.1 + 54147 0.7 0.557799
Target:  5'- gGCCGCGUCGugAUcGuuGUGCUgGCcgUCa -3'
miRNA:   3'- -CGGCGUAGCugUA-UggUACGAgCG--AG- -5'
24945 5' -53.4 NC_005284.1 + 9916 0.7 0.535938
Target:  5'- cGCCGCGUagGGCGUGCCcgugAUGCgCGCg- -3'
miRNA:   3'- -CGGCGUAg-CUGUAUGG----UACGaGCGag -5'
24945 5' -53.4 NC_005284.1 + 32671 0.7 0.591032
Target:  5'- cCCGCAUCGGCGgggGCCA-GCggacCGCa- -3'
miRNA:   3'- cGGCGUAGCUGUa--UGGUaCGa---GCGag -5'
24945 5' -53.4 NC_005284.1 + 10158 0.69 0.647005
Target:  5'- cGCCGCgGUCG-CGgucGCCGcgcguuccGCUCGCUCa -3'
miRNA:   3'- -CGGCG-UAGCuGUa--UGGUa-------CGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 21809 0.69 0.613381
Target:  5'- cCCGCAggcugCGACucucugcuUCAUGCUCGUUCc -3'
miRNA:   3'- cGGCGUa----GCUGuau-----GGUACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 26520 0.69 0.624586
Target:  5'- -aUGCAUCGGCAguucGCCGcGC-CGCUCc -3'
miRNA:   3'- cgGCGUAGCUGUa---UGGUaCGaGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.