Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24945 | 5' | -53.4 | NC_005284.1 | + | 32671 | 0.7 | 0.591032 |
Target: 5'- cCCGCAUCGGCGgggGCCA-GCggacCGCa- -3' miRNA: 3'- cGGCGUAGCUGUa--UGGUaCGa---GCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 23667 | 0.7 | 0.579907 |
Target: 5'- cGCCGCGUCGAUgaACC--GCUcgaccCGCUCc -3' miRNA: 3'- -CGGCGUAGCUGuaUGGuaCGA-----GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 10053 | 0.7 | 0.579907 |
Target: 5'- cGCCGUauaacgcgcuuuGUCGAuCGUGCCuUGCUuCGCUg -3' miRNA: 3'- -CGGCG------------UAGCU-GUAUGGuACGA-GCGAg -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 54147 | 0.7 | 0.557799 |
Target: 5'- gGCCGCGUCGugAUcGuuGUGCUgGCcgUCa -3' miRNA: 3'- -CGGCGUAGCugUA-UggUACGAgCG--AG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 9916 | 0.7 | 0.535938 |
Target: 5'- cGCCGCGUagGGCGUGCCcgugAUGCgCGCg- -3' miRNA: 3'- -CGGCGUAg-CUGUAUGG----UACGaGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 18731 | 0.7 | 0.535938 |
Target: 5'- cGCagGCGUCGACGUcguAUCAgggGCUCGCg- -3' miRNA: 3'- -CGg-CGUAGCUGUA---UGGUa--CGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 46677 | 0.7 | 0.534852 |
Target: 5'- cGCCGCucgggacguUCGGCGUugcccacugcgccGCCAUGCUCGg-- -3' miRNA: 3'- -CGGCGu--------AGCUGUA-------------UGGUACGAGCgag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 42106 | 0.71 | 0.525119 |
Target: 5'- uGCCGC-UCGGCcgGCaCGcGCUCGCg- -3' miRNA: 3'- -CGGCGuAGCUGuaUG-GUaCGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 11908 | 0.71 | 0.525119 |
Target: 5'- aGCCGCugcUCGAgAUaGCCGcGCUCGCg- -3' miRNA: 3'- -CGGCGu--AGCUgUA-UGGUaCGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 17079 | 0.71 | 0.525119 |
Target: 5'- aUCGCGUCGGCGaucgucGCCGUGUgcgCGUUCg -3' miRNA: 3'- cGGCGUAGCUGUa-----UGGUACGa--GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 15179 | 0.71 | 0.514384 |
Target: 5'- gGCCGUGcCGACcgACCAguucgcGCUCGCgUCg -3' miRNA: 3'- -CGGCGUaGCUGuaUGGUa-----CGAGCG-AG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 31201 | 0.71 | 0.514384 |
Target: 5'- gGCCGaCcgCGACAUcCCGaagcUGCUCGCa- -3' miRNA: 3'- -CGGC-GuaGCUGUAuGGU----ACGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 26407 | 0.71 | 0.503739 |
Target: 5'- uGCCGCGcUGAagaAUGuCCAUGCUuucCGCUCg -3' miRNA: 3'- -CGGCGUaGCUg--UAU-GGUACGA---GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 38664 | 0.74 | 0.367004 |
Target: 5'- cGCCGCGugcgcUCGGCcgaacgGCCGU-CUCGCUCg -3' miRNA: 3'- -CGGCGU-----AGCUGua----UGGUAcGAGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 8980 | 0.74 | 0.367004 |
Target: 5'- uGUCGCGUCGAgCGguUGCCGUGgUCGCg- -3' miRNA: 3'- -CGGCGUAGCU-GU--AUGGUACgAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 50012 | 0.79 | 0.167459 |
Target: 5'- cGCCcCA-CGACGUACCGcUGCUUGCUCa -3' miRNA: 3'- -CGGcGUaGCUGUAUGGU-ACGAGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 31716 | 1.11 | 0.00103 |
Target: 5'- aGCCGCAUCGACAUACCAUGCUCGCUCc -3' miRNA: 3'- -CGGCGUAGCUGUAUGGUACGAGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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