miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24945 5' -53.4 NC_005284.1 + 1624 0.66 0.787236
Target:  5'- uGCuCGCGcUCGACAUGgCGcGCaaGCUCg -3'
miRNA:   3'- -CG-GCGU-AGCUGUAUgGUaCGagCGAG- -5'
24945 5' -53.4 NC_005284.1 + 2186 0.68 0.691586
Target:  5'- gGCCGCGccaugcUUGAaa-AUCAUGCUgGCUCa -3'
miRNA:   3'- -CGGCGU------AGCUguaUGGUACGAgCGAG- -5'
24945 5' -53.4 NC_005284.1 + 3395 0.68 0.702612
Target:  5'- cGCCGC-UCGGCcUGCacuaucgGCUCGCa- -3'
miRNA:   3'- -CGGCGuAGCUGuAUGgua----CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 4550 0.67 0.766846
Target:  5'- cGCCGCcgCGA---GCCA-GCUuuUGCUCg -3'
miRNA:   3'- -CGGCGuaGCUguaUGGUaCGA--GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 8598 0.68 0.699311
Target:  5'- cGCCGCAugcgcggucucucgUCGACG-GCCG-GCUCGUa- -3'
miRNA:   3'- -CGGCGU--------------AGCUGUaUGGUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 8690 0.68 0.6582
Target:  5'- cGCCGCAagCGuGCAggucACgGUGCgcgCGCUCg -3'
miRNA:   3'- -CGGCGUa-GC-UGUa---UGgUACGa--GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 8786 0.67 0.713566
Target:  5'- cGCCGCGUCGAgcgcgcgcacCGUgACC-UGCaCGCUUg -3'
miRNA:   3'- -CGGCGUAGCU----------GUA-UGGuACGaGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 8980 0.74 0.367004
Target:  5'- uGUCGCGUCGAgCGguUGCCGUGgUCGCg- -3'
miRNA:   3'- -CGGCGUAGCU-GU--AUGGUACgAGCGag -5'
24945 5' -53.4 NC_005284.1 + 9417 0.67 0.724437
Target:  5'- aCgGCAUCGugAaACUcgGCgugUCGCUCg -3'
miRNA:   3'- cGgCGUAGCugUaUGGuaCG---AGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 9883 0.66 0.816538
Target:  5'- aGCCGCAcagcaggagcUCGAgCGcGCCGaaGCgUCGCUCg -3'
miRNA:   3'- -CGGCGU----------AGCU-GUaUGGUa-CG-AGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 9916 0.7 0.535938
Target:  5'- cGCCGCGUagGGCGUGCCcgugAUGCgCGCg- -3'
miRNA:   3'- -CGGCGUAg-CUGUAUGG----UACGaGCGag -5'
24945 5' -53.4 NC_005284.1 + 10053 0.7 0.579907
Target:  5'- cGCCGUauaacgcgcuuuGUCGAuCGUGCCuUGCUuCGCUg -3'
miRNA:   3'- -CGGCG------------UAGCU-GUAUGGuACGA-GCGAg -5'
24945 5' -53.4 NC_005284.1 + 10158 0.69 0.647005
Target:  5'- cGCCGCgGUCG-CGgucGCCGcgcguuccGCUCGCUCa -3'
miRNA:   3'- -CGGCG-UAGCuGUa--UGGUa-------CGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 10476 0.66 0.797186
Target:  5'- gGCCGCccgCGACGccucuUGCUucGUGCgcagcCGCUCa -3'
miRNA:   3'- -CGGCGua-GCUGU-----AUGG--UACGa----GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 11908 0.71 0.525119
Target:  5'- aGCCGCugcUCGAgAUaGCCGcGCUCGCg- -3'
miRNA:   3'- -CGGCGu--AGCUgUA-UGGUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 15179 0.71 0.514384
Target:  5'- gGCCGUGcCGACcgACCAguucgcGCUCGCgUCg -3'
miRNA:   3'- -CGGCGUaGCUGuaUGGUa-----CGAGCG-AG- -5'
24945 5' -53.4 NC_005284.1 + 15481 0.66 0.816538
Target:  5'- aGUCGCG-CGACGUAgccuCCcgGCUCGaauUCg -3'
miRNA:   3'- -CGGCGUaGCUGUAU----GGuaCGAGCg--AG- -5'
24945 5' -53.4 NC_005284.1 + 15736 0.66 0.777119
Target:  5'- cCCGCGugauUCGGCAcGCCGUuCUUGCUg -3'
miRNA:   3'- cGGCGU----AGCUGUaUGGUAcGAGCGAg -5'
24945 5' -53.4 NC_005284.1 + 15797 0.67 0.745881
Target:  5'- cGCgCGCGUCGACAgacgcCCGUGCaUGUg- -3'
miRNA:   3'- -CG-GCGUAGCUGUau---GGUACGaGCGag -5'
24945 5' -53.4 NC_005284.1 + 16688 0.66 0.777119
Target:  5'- gGCCgGCGUCGGCGUGCCGcUGaCguccgaCGCg- -3'
miRNA:   3'- -CGG-CGUAGCUGUAUGGU-AC-Ga-----GCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.