miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24945 5' -53.4 NC_005284.1 + 36245 0.68 0.702612
Target:  5'- cGCgGUuUUGACGUGCUuuuucaauUGCUCGCUg -3'
miRNA:   3'- -CGgCGuAGCUGUAUGGu-------ACGAGCGAg -5'
24945 5' -53.4 NC_005284.1 + 38664 0.74 0.367004
Target:  5'- cGCCGCGugcgcUCGGCcgaacgGCCGU-CUCGCUCg -3'
miRNA:   3'- -CGGCGU-----AGCUGua----UGGUAcGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 38748 0.68 0.67939
Target:  5'- cGCCGCGUCGAC---CCAUGCauaccgucgguaaUUGCg- -3'
miRNA:   3'- -CGGCGUAGCUGuauGGUACG-------------AGCGag -5'
24945 5' -53.4 NC_005284.1 + 39821 0.67 0.75643
Target:  5'- gGCCGCGUgCcGCAUugCAUGggCGCg- -3'
miRNA:   3'- -CGGCGUA-GcUGUAugGUACgaGCGag -5'
24945 5' -53.4 NC_005284.1 + 42106 0.71 0.525119
Target:  5'- uGCCGC-UCGGCcgGCaCGcGCUCGCg- -3'
miRNA:   3'- -CGGCGuAGCUGuaUG-GUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 45442 0.66 0.806957
Target:  5'- cGCgGCGUCGcgauugucggGCG-ACCAguUGCUCGCg- -3'
miRNA:   3'- -CGgCGUAGC----------UGUaUGGU--ACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 45794 0.66 0.797186
Target:  5'- cGCagGCGUCGGCAUGCUcgGCgaaggugucCGCa- -3'
miRNA:   3'- -CGg-CGUAGCUGUAUGGuaCGa--------GCGag -5'
24945 5' -53.4 NC_005284.1 + 46677 0.7 0.534852
Target:  5'- cGCCGCucgggacguUCGGCGUugcccacugcgccGCCAUGCUCGg-- -3'
miRNA:   3'- -CGGCGu--------AGCUGUA-------------UGGUACGAGCgag -5'
24945 5' -53.4 NC_005284.1 + 47397 0.67 0.766846
Target:  5'- cCCGCAUCGAuCAguugACgGUucaGCUCGCg- -3'
miRNA:   3'- cGGCGUAGCU-GUa---UGgUA---CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 48890 0.68 0.702612
Target:  5'- -aCGCGUCGACGggaACCAgucggGCa-GCUCg -3'
miRNA:   3'- cgGCGUAGCUGUa--UGGUa----CGagCGAG- -5'
24945 5' -53.4 NC_005284.1 + 48928 0.67 0.724437
Target:  5'- cGCCGCuuUCGcCucGCgGUGCUCGCa- -3'
miRNA:   3'- -CGGCGu-AGCuGuaUGgUACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 48963 0.68 0.669369
Target:  5'- aCUGCAUCGACGaaGCgGUGCUgCGCg- -3'
miRNA:   3'- cGGCGUAGCUGUa-UGgUACGA-GCGag -5'
24945 5' -53.4 NC_005284.1 + 49462 0.66 0.797186
Target:  5'- uGCC-CGUgCGGCGcGCCA-GCUCGCg- -3'
miRNA:   3'- -CGGcGUA-GCUGUaUGGUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 50012 0.79 0.167459
Target:  5'- cGCCcCA-CGACGUACCGcUGCUUGCUCa -3'
miRNA:   3'- -CGGcGUaGCUGUAUGGU-ACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 53950 0.66 0.777119
Target:  5'- cGCCGCAUccCGGCc-GCUGUGCUCGa-- -3'
miRNA:   3'- -CGGCGUA--GCUGuaUGGUACGAGCgag -5'
24945 5' -53.4 NC_005284.1 + 54147 0.7 0.557799
Target:  5'- gGCCGCGUCGugAUcGuuGUGCUgGCcgUCa -3'
miRNA:   3'- -CGGCGUAGCugUA-UggUACGAgCG--AG- -5'
24945 5' -53.4 NC_005284.1 + 54654 0.67 0.75643
Target:  5'- aCCGCAguggCGACAgucacgcGCCcUGCUUGCa- -3'
miRNA:   3'- cGGCGUa---GCUGUa------UGGuACGAGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.