miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24945 5' -53.4 NC_005284.1 + 31716 1.11 0.00103
Target:  5'- aGCCGCAUCGACAUACCAUGCUCGCUCc -3'
miRNA:   3'- -CGGCGUAGCUGUAUGGUACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 31572 0.67 0.713566
Target:  5'- gGUCGCAccauUCGAUuuUGCUGUuCUCGCUCa -3'
miRNA:   3'- -CGGCGU----AGCUGu-AUGGUAcGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 31201 0.71 0.514384
Target:  5'- gGCCGaCcgCGACAUcCCGaagcUGCUCGCa- -3'
miRNA:   3'- -CGGC-GuaGCUGUAuGGU----ACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 31008 0.66 0.806957
Target:  5'- uGCCGCcgUGcguGCGgaaguUGCCGguugGCUCGCUg -3'
miRNA:   3'- -CGGCGuaGC---UGU-----AUGGUa---CGAGCGAg -5'
24945 5' -53.4 NC_005284.1 + 30766 0.67 0.75643
Target:  5'- gGCCGgGUaGGCGaGCCAUGCgaUCGCa- -3'
miRNA:   3'- -CGGCgUAgCUGUaUGGUACG--AGCGag -5'
24945 5' -53.4 NC_005284.1 + 26520 0.69 0.624586
Target:  5'- -aUGCAUCGGCAguucGCCGcGC-CGCUCc -3'
miRNA:   3'- cgGCGUAGCUGUa---UGGUaCGaGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 26407 0.71 0.503739
Target:  5'- uGCCGCGcUGAagaAUGuCCAUGCUuucCGCUCg -3'
miRNA:   3'- -CGGCGUaGCUg--UAU-GGUACGA---GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 23667 0.7 0.579907
Target:  5'- cGCCGCGUCGAUgaACC--GCUcgaccCGCUCc -3'
miRNA:   3'- -CGGCGUAGCUGuaUGGuaCGA-----GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 23539 0.68 0.702612
Target:  5'- gGUCGCGUUGuGCAUGCCGU-CUUGCcCa -3'
miRNA:   3'- -CGGCGUAGC-UGUAUGGUAcGAGCGaG- -5'
24945 5' -53.4 NC_005284.1 + 23317 0.68 0.669369
Target:  5'- -gCGCAUCGAUAguugcUugCGUGCUCgacacgGCUCc -3'
miRNA:   3'- cgGCGUAGCUGU-----AugGUACGAG------CGAG- -5'
24945 5' -53.4 NC_005284.1 + 21948 0.67 0.750115
Target:  5'- cGCUGCGUCGACGUcugauaggcggcggcACCAUcgcccacgccgGCggCGCUg -3'
miRNA:   3'- -CGGCGUAGCUGUA---------------UGGUA-----------CGa-GCGAg -5'
24945 5' -53.4 NC_005284.1 + 21809 0.69 0.613381
Target:  5'- cCCGCAggcugCGACucucugcuUCAUGCUCGUUCc -3'
miRNA:   3'- cGGCGUa----GCUGuau-----GGUACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 21673 0.66 0.797186
Target:  5'- cGCCGCGUCGGCGgugGCC--GC-CGUc- -3'
miRNA:   3'- -CGGCGUAGCUGUa--UGGuaCGaGCGag -5'
24945 5' -53.4 NC_005284.1 + 21496 0.66 0.806957
Target:  5'- gGCCGCGcugcUUGGCAUggcgGCCGgcGCUUGCgUCg -3'
miRNA:   3'- -CGGCGU----AGCUGUA----UGGUa-CGAGCG-AG- -5'
24945 5' -53.4 NC_005284.1 + 18731 0.7 0.535938
Target:  5'- cGCagGCGUCGACGUcguAUCAgggGCUCGCg- -3'
miRNA:   3'- -CGg-CGUAGCUGUA---UGGUa--CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 18579 0.67 0.735213
Target:  5'- cGCCGgaAUCGACGUcacGCCGaGCgCGUUCu -3'
miRNA:   3'- -CGGCg-UAGCUGUA---UGGUaCGaGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 17079 0.71 0.525119
Target:  5'- aUCGCGUCGGCGaucgucGCCGUGUgcgCGUUCg -3'
miRNA:   3'- cGGCGUAGCUGUa-----UGGUACGa--GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 16688 0.66 0.777119
Target:  5'- gGCCgGCGUCGGCGUGCCGcUGaCguccgaCGCg- -3'
miRNA:   3'- -CGG-CGUAGCUGUAUGGU-AC-Ga-----GCGag -5'
24945 5' -53.4 NC_005284.1 + 15797 0.67 0.745881
Target:  5'- cGCgCGCGUCGACAgacgcCCGUGCaUGUg- -3'
miRNA:   3'- -CG-GCGUAGCUGUau---GGUACGaGCGag -5'
24945 5' -53.4 NC_005284.1 + 15736 0.66 0.777119
Target:  5'- cCCGCGugauUCGGCAcGCCGUuCUUGCUg -3'
miRNA:   3'- cGGCGU----AGCUGUaUGGUAcGAGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.