Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24945 | 5' | -53.4 | NC_005284.1 | + | 15481 | 0.66 | 0.816538 |
Target: 5'- aGUCGCG-CGACGUAgccuCCcgGCUCGaauUCg -3' miRNA: 3'- -CGGCGUaGCUGUAU----GGuaCGAGCg--AG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 15179 | 0.71 | 0.514384 |
Target: 5'- gGCCGUGcCGACcgACCAguucgcGCUCGCgUCg -3' miRNA: 3'- -CGGCGUaGCUGuaUGGUa-----CGAGCG-AG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 11908 | 0.71 | 0.525119 |
Target: 5'- aGCCGCugcUCGAgAUaGCCGcGCUCGCg- -3' miRNA: 3'- -CGGCGu--AGCUgUA-UGGUaCGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 10476 | 0.66 | 0.797186 |
Target: 5'- gGCCGCccgCGACGccucuUGCUucGUGCgcagcCGCUCa -3' miRNA: 3'- -CGGCGua-GCUGU-----AUGG--UACGa----GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 10158 | 0.69 | 0.647005 |
Target: 5'- cGCCGCgGUCG-CGgucGCCGcgcguuccGCUCGCUCa -3' miRNA: 3'- -CGGCG-UAGCuGUa--UGGUa-------CGAGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 10053 | 0.7 | 0.579907 |
Target: 5'- cGCCGUauaacgcgcuuuGUCGAuCGUGCCuUGCUuCGCUg -3' miRNA: 3'- -CGGCG------------UAGCU-GUAUGGuACGA-GCGAg -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 9916 | 0.7 | 0.535938 |
Target: 5'- cGCCGCGUagGGCGUGCCcgugAUGCgCGCg- -3' miRNA: 3'- -CGGCGUAg-CUGUAUGG----UACGaGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 9883 | 0.66 | 0.816538 |
Target: 5'- aGCCGCAcagcaggagcUCGAgCGcGCCGaaGCgUCGCUCg -3' miRNA: 3'- -CGGCGU----------AGCU-GUaUGGUa-CG-AGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 9417 | 0.67 | 0.724437 |
Target: 5'- aCgGCAUCGugAaACUcgGCgugUCGCUCg -3' miRNA: 3'- cGgCGUAGCugUaUGGuaCG---AGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 8980 | 0.74 | 0.367004 |
Target: 5'- uGUCGCGUCGAgCGguUGCCGUGgUCGCg- -3' miRNA: 3'- -CGGCGUAGCU-GU--AUGGUACgAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 8786 | 0.67 | 0.713566 |
Target: 5'- cGCCGCGUCGAgcgcgcgcacCGUgACC-UGCaCGCUUg -3' miRNA: 3'- -CGGCGUAGCU----------GUA-UGGuACGaGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 8690 | 0.68 | 0.6582 |
Target: 5'- cGCCGCAagCGuGCAggucACgGUGCgcgCGCUCg -3' miRNA: 3'- -CGGCGUa-GC-UGUa---UGgUACGa--GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 8598 | 0.68 | 0.699311 |
Target: 5'- cGCCGCAugcgcggucucucgUCGACG-GCCG-GCUCGUa- -3' miRNA: 3'- -CGGCGU--------------AGCUGUaUGGUaCGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 4550 | 0.67 | 0.766846 |
Target: 5'- cGCCGCcgCGA---GCCA-GCUuuUGCUCg -3' miRNA: 3'- -CGGCGuaGCUguaUGGUaCGA--GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 3395 | 0.68 | 0.702612 |
Target: 5'- cGCCGC-UCGGCcUGCacuaucgGCUCGCa- -3' miRNA: 3'- -CGGCGuAGCUGuAUGgua----CGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 2186 | 0.68 | 0.691586 |
Target: 5'- gGCCGCGccaugcUUGAaa-AUCAUGCUgGCUCa -3' miRNA: 3'- -CGGCGU------AGCUguaUGGUACGAgCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 1624 | 0.66 | 0.787236 |
Target: 5'- uGCuCGCGcUCGACAUGgCGcGCaaGCUCg -3' miRNA: 3'- -CG-GCGU-AGCUGUAUgGUaCGagCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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