miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24945 5' -53.4 NC_005284.1 + 21496 0.66 0.806957
Target:  5'- gGCCGCGcugcUUGGCAUggcgGCCGgcGCUUGCgUCg -3'
miRNA:   3'- -CGGCGU----AGCUGUA----UGGUa-CGAGCG-AG- -5'
24945 5' -53.4 NC_005284.1 + 31572 0.67 0.713566
Target:  5'- gGUCGCAccauUCGAUuuUGCUGUuCUCGCUCa -3'
miRNA:   3'- -CGGCGU----AGCUGu-AUGGUAcGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 9417 0.67 0.724437
Target:  5'- aCgGCAUCGugAaACUcgGCgugUCGCUCg -3'
miRNA:   3'- cGgCGUAGCugUaUGGuaCG---AGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 30766 0.67 0.75643
Target:  5'- gGCCGgGUaGGCGaGCCAUGCgaUCGCa- -3'
miRNA:   3'- -CGGCgUAgCUGUaUGGUACG--AGCGag -5'
24945 5' -53.4 NC_005284.1 + 39821 0.67 0.75643
Target:  5'- gGCCGCGUgCcGCAUugCAUGggCGCg- -3'
miRNA:   3'- -CGGCGUA-GcUGUAugGUACgaGCGag -5'
24945 5' -53.4 NC_005284.1 + 16688 0.66 0.777119
Target:  5'- gGCCgGCGUCGGCGUGCCGcUGaCguccgaCGCg- -3'
miRNA:   3'- -CGG-CGUAGCUGUAUGGU-AC-Ga-----GCGag -5'
24945 5' -53.4 NC_005284.1 + 1624 0.66 0.787236
Target:  5'- uGCuCGCGcUCGACAUGgCGcGCaaGCUCg -3'
miRNA:   3'- -CG-GCGU-AGCUGUAUgGUaCGagCGAG- -5'
24945 5' -53.4 NC_005284.1 + 21673 0.66 0.797186
Target:  5'- cGCCGCGUCGGCGgugGCC--GC-CGUc- -3'
miRNA:   3'- -CGGCGUAGCUGUa--UGGuaCGaGCGag -5'
24945 5' -53.4 NC_005284.1 + 45794 0.66 0.797186
Target:  5'- cGCagGCGUCGGCAUGCUcgGCgaaggugucCGCa- -3'
miRNA:   3'- -CGg-CGUAGCUGUAUGGuaCGa--------GCGag -5'
24945 5' -53.4 NC_005284.1 + 36245 0.68 0.702612
Target:  5'- cGCgGUuUUGACGUGCUuuuucaauUGCUCGCUg -3'
miRNA:   3'- -CGgCGuAGCUGUAUGGu-------ACGAGCGAg -5'
24945 5' -53.4 NC_005284.1 + 23539 0.68 0.702612
Target:  5'- gGUCGCGUUGuGCAUGCCGU-CUUGCcCa -3'
miRNA:   3'- -CGGCGUAGC-UGUAUGGUAcGAGCGaG- -5'
24945 5' -53.4 NC_005284.1 + 8598 0.68 0.699311
Target:  5'- cGCCGCAugcgcggucucucgUCGACG-GCCG-GCUCGUa- -3'
miRNA:   3'- -CGGCGU--------------AGCUGUaUGGUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 50012 0.79 0.167459
Target:  5'- cGCCcCA-CGACGUACCGcUGCUUGCUCa -3'
miRNA:   3'- -CGGcGUaGCUGUAUGGU-ACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 15179 0.71 0.514384
Target:  5'- gGCCGUGcCGACcgACCAguucgcGCUCGCgUCg -3'
miRNA:   3'- -CGGCGUaGCUGuaUGGUa-----CGAGCG-AG- -5'
24945 5' -53.4 NC_005284.1 + 18731 0.7 0.535938
Target:  5'- cGCagGCGUCGACGUcguAUCAgggGCUCGCg- -3'
miRNA:   3'- -CGg-CGUAGCUGUA---UGGUa--CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 32671 0.7 0.591032
Target:  5'- cCCGCAUCGGCGgggGCCA-GCggacCGCa- -3'
miRNA:   3'- cGGCGUAGCUGUa--UGGUaCGa---GCGag -5'
24945 5' -53.4 NC_005284.1 + 26520 0.69 0.624586
Target:  5'- -aUGCAUCGGCAguucGCCGcGC-CGCUCc -3'
miRNA:   3'- cgGCGUAGCUGUa---UGGUaCGaGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 8690 0.68 0.6582
Target:  5'- cGCCGCAagCGuGCAggucACgGUGCgcgCGCUCg -3'
miRNA:   3'- -CGGCGUa-GC-UGUa---UGgUACGa--GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 48963 0.68 0.669369
Target:  5'- aCUGCAUCGACGaaGCgGUGCUgCGCg- -3'
miRNA:   3'- cGGCGUAGCUGUa-UGgUACGA-GCGag -5'
24945 5' -53.4 NC_005284.1 + 2186 0.68 0.691586
Target:  5'- gGCCGCGccaugcUUGAaa-AUCAUGCUgGCUCa -3'
miRNA:   3'- -CGGCGU------AGCUguaUGGUACGAgCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.