miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24945 5' -53.4 NC_005284.1 + 15481 0.66 0.816538
Target:  5'- aGUCGCG-CGACGUAgccuCCcgGCUCGaauUCg -3'
miRNA:   3'- -CGGCGUaGCUGUAU----GGuaCGAGCg--AG- -5'
24945 5' -53.4 NC_005284.1 + 23317 0.68 0.669369
Target:  5'- -gCGCAUCGAUAguugcUugCGUGCUCgacacgGCUCc -3'
miRNA:   3'- cgGCGUAGCUGU-----AugGUACGAG------CGAG- -5'
24945 5' -53.4 NC_005284.1 + 21809 0.69 0.613381
Target:  5'- cCCGCAggcugCGACucucugcuUCAUGCUCGUUCc -3'
miRNA:   3'- cGGCGUa----GCUGuau-----GGUACGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 8980 0.74 0.367004
Target:  5'- uGUCGCGUCGAgCGguUGCCGUGgUCGCg- -3'
miRNA:   3'- -CGGCGUAGCU-GU--AUGGUACgAGCGag -5'
24945 5' -53.4 NC_005284.1 + 53950 0.66 0.777119
Target:  5'- cGCCGCAUccCGGCc-GCUGUGCUCGa-- -3'
miRNA:   3'- -CGGCGUA--GCUGuaUGGUACGAGCgag -5'
24945 5' -53.4 NC_005284.1 + 4550 0.67 0.766846
Target:  5'- cGCCGCcgCGA---GCCA-GCUuuUGCUCg -3'
miRNA:   3'- -CGGCGuaGCUguaUGGUaCGA--GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 54654 0.67 0.75643
Target:  5'- aCCGCAguggCGACAgucacgcGCCcUGCUUGCa- -3'
miRNA:   3'- cGGCGUa---GCUGUa------UGGuACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 21948 0.67 0.750115
Target:  5'- cGCUGCGUCGACGUcugauaggcggcggcACCAUcgcccacgccgGCggCGCUg -3'
miRNA:   3'- -CGGCGUAGCUGUA---------------UGGUA-----------CGa-GCGAg -5'
24945 5' -53.4 NC_005284.1 + 48928 0.67 0.724437
Target:  5'- cGCCGCuuUCGcCucGCgGUGCUCGCa- -3'
miRNA:   3'- -CGGCGu-AGCuGuaUGgUACGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 38748 0.68 0.67939
Target:  5'- cGCCGCGUCGAC---CCAUGCauaccgucgguaaUUGCg- -3'
miRNA:   3'- -CGGCGUAGCUGuauGGUACG-------------AGCGag -5'
24945 5' -53.4 NC_005284.1 + 3395 0.68 0.702612
Target:  5'- cGCCGC-UCGGCcUGCacuaucgGCUCGCa- -3'
miRNA:   3'- -CGGCGuAGCUGuAUGgua----CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 18579 0.67 0.735213
Target:  5'- cGCCGgaAUCGACGUcacGCCGaGCgCGUUCu -3'
miRNA:   3'- -CGGCg-UAGCUGUA---UGGUaCGaGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 49462 0.66 0.797186
Target:  5'- uGCC-CGUgCGGCGcGCCA-GCUCGCg- -3'
miRNA:   3'- -CGGcGUA-GCUGUaUGGUaCGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 48890 0.68 0.702612
Target:  5'- -aCGCGUCGACGggaACCAgucggGCa-GCUCg -3'
miRNA:   3'- cgGCGUAGCUGUa--UGGUa----CGagCGAG- -5'
24945 5' -53.4 NC_005284.1 + 10476 0.66 0.797186
Target:  5'- gGCCGCccgCGACGccucuUGCUucGUGCgcagcCGCUCa -3'
miRNA:   3'- -CGGCGua-GCUGU-----AUGG--UACGa----GCGAG- -5'
24945 5' -53.4 NC_005284.1 + 15797 0.67 0.745881
Target:  5'- cGCgCGCGUCGACAgacgcCCGUGCaUGUg- -3'
miRNA:   3'- -CG-GCGUAGCUGUau---GGUACGaGCGag -5'
24945 5' -53.4 NC_005284.1 + 31948 0.68 0.69048
Target:  5'- aGCCGCGcagcagacgaggcUCGACAUuccuGCCAgucaaGCUUGCg- -3'
miRNA:   3'- -CGGCGU-------------AGCUGUA----UGGUa----CGAGCGag -5'
24945 5' -53.4 NC_005284.1 + 10158 0.69 0.647005
Target:  5'- cGCCGCgGUCG-CGgucGCCGcgcguuccGCUCGCUCa -3'
miRNA:   3'- -CGGCG-UAGCuGUa--UGGUa-------CGAGCGAG- -5'
24945 5' -53.4 NC_005284.1 + 15736 0.66 0.777119
Target:  5'- cCCGCGugauUCGGCAcGCCGUuCUUGCUg -3'
miRNA:   3'- cGGCGU----AGCUGUaUGGUAcGAGCGAg -5'
24945 5' -53.4 NC_005284.1 + 47397 0.67 0.766846
Target:  5'- cCCGCAUCGAuCAguugACgGUucaGCUCGCg- -3'
miRNA:   3'- cGGCGUAGCU-GUa---UGgUA---CGAGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.