Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24945 | 5' | -53.4 | NC_005284.1 | + | 46677 | 0.7 | 0.534852 |
Target: 5'- cGCCGCucgggacguUCGGCGUugcccacugcgccGCCAUGCUCGg-- -3' miRNA: 3'- -CGGCGu--------AGCUGUA-------------UGGUACGAGCgag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 23317 | 0.68 | 0.669369 |
Target: 5'- -gCGCAUCGAUAguugcUugCGUGCUCgacacgGCUCc -3' miRNA: 3'- cgGCGUAGCUGU-----AugGUACGAG------CGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 10158 | 0.69 | 0.647005 |
Target: 5'- cGCCGCgGUCG-CGgucGCCGcgcguuccGCUCGCUCa -3' miRNA: 3'- -CGGCG-UAGCuGUa--UGGUa-------CGAGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 17079 | 0.71 | 0.525119 |
Target: 5'- aUCGCGUCGGCGaucgucGCCGUGUgcgCGUUCg -3' miRNA: 3'- cGGCGUAGCUGUa-----UGGUACGa--GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 26407 | 0.71 | 0.503739 |
Target: 5'- uGCCGCGcUGAagaAUGuCCAUGCUuucCGCUCg -3' miRNA: 3'- -CGGCGUaGCUg--UAU-GGUACGA---GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 21809 | 0.69 | 0.613381 |
Target: 5'- cCCGCAggcugCGACucucugcuUCAUGCUCGUUCc -3' miRNA: 3'- cGGCGUa----GCUGuau-----GGUACGAGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 54147 | 0.7 | 0.557799 |
Target: 5'- gGCCGCGUCGugAUcGuuGUGCUgGCcgUCa -3' miRNA: 3'- -CGGCGUAGCugUA-UggUACGAgCG--AG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 11908 | 0.71 | 0.525119 |
Target: 5'- aGCCGCugcUCGAgAUaGCCGcGCUCGCg- -3' miRNA: 3'- -CGGCGu--AGCUgUA-UGGUaCGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 38748 | 0.68 | 0.67939 |
Target: 5'- cGCCGCGUCGAC---CCAUGCauaccgucgguaaUUGCg- -3' miRNA: 3'- -CGGCGUAGCUGuauGGUACG-------------AGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 9916 | 0.7 | 0.535938 |
Target: 5'- cGCCGCGUagGGCGUGCCcgugAUGCgCGCg- -3' miRNA: 3'- -CGGCGUAg-CUGUAUGG----UACGaGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 23667 | 0.7 | 0.579907 |
Target: 5'- cGCCGCGUCGAUgaACC--GCUcgaccCGCUCc -3' miRNA: 3'- -CGGCGUAGCUGuaUGGuaCGA-----GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 10053 | 0.7 | 0.579907 |
Target: 5'- cGCCGUauaacgcgcuuuGUCGAuCGUGCCuUGCUuCGCUg -3' miRNA: 3'- -CGGCG------------UAGCU-GUAUGGuACGA-GCGAg -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 36245 | 0.68 | 0.702612 |
Target: 5'- cGCgGUuUUGACGUGCUuuuucaauUGCUCGCUg -3' miRNA: 3'- -CGgCGuAGCUGUAUGGu-------ACGAGCGAg -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 15179 | 0.71 | 0.514384 |
Target: 5'- gGCCGUGcCGACcgACCAguucgcGCUCGCgUCg -3' miRNA: 3'- -CGGCGUaGCUGuaUGGUa-----CGAGCG-AG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 45442 | 0.66 | 0.806957 |
Target: 5'- cGCgGCGUCGcgauugucggGCG-ACCAguUGCUCGCg- -3' miRNA: 3'- -CGgCGUAGC----------UGUaUGGU--ACGAGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 9883 | 0.66 | 0.816538 |
Target: 5'- aGCCGCAcagcaggagcUCGAgCGcGCCGaaGCgUCGCUCg -3' miRNA: 3'- -CGGCGU----------AGCU-GUaUGGUa-CG-AGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 8690 | 0.68 | 0.6582 |
Target: 5'- cGCCGCAagCGuGCAggucACgGUGCgcgCGCUCg -3' miRNA: 3'- -CGGCGUa-GC-UGUa---UGgUACGa--GCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 30766 | 0.67 | 0.75643 |
Target: 5'- gGCCGgGUaGGCGaGCCAUGCgaUCGCa- -3' miRNA: 3'- -CGGCgUAgCUGUaUGGUACG--AGCGag -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 9417 | 0.67 | 0.724437 |
Target: 5'- aCgGCAUCGugAaACUcgGCgugUCGCUCg -3' miRNA: 3'- cGgCGUAGCugUaUGGuaCG---AGCGAG- -5' |
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24945 | 5' | -53.4 | NC_005284.1 | + | 31572 | 0.67 | 0.713566 |
Target: 5'- gGUCGCAccauUCGAUuuUGCUGUuCUCGCUCa -3' miRNA: 3'- -CGGCGU----AGCUGu-AUGGUAcGAGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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