miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24946 5' -57.8 NC_005284.1 + 8801 0.66 0.608324
Target:  5'- gCGGaUCGAAcuGCGcgCCGCGUCGAGcgCg -3'
miRNA:   3'- aGCC-GGCUU--CGCa-GGUGCGGCUCaaG- -5'
24946 5' -57.8 NC_005284.1 + 31080 0.66 0.597567
Target:  5'- gCGGCUccaucgacagGAAGCGUaCGCGCgCGGGUa- -3'
miRNA:   3'- aGCCGG----------CUUCGCAgGUGCG-GCUCAag -5'
24946 5' -57.8 NC_005284.1 + 33767 0.66 0.597567
Target:  5'- uUCuGUCGAAGUGcgCCgGCGCCGAcUUCg -3'
miRNA:   3'- -AGcCGGCUUCGCa-GG-UGCGGCUcAAG- -5'
24946 5' -57.8 NC_005284.1 + 30251 0.66 0.597567
Target:  5'- gUCGGCCGucGAGCGggcgcguucgUUCGCuGUCGAGUg- -3'
miRNA:   3'- -AGCCGGC--UUCGC----------AGGUG-CGGCUCAag -5'
24946 5' -57.8 NC_005284.1 + 46466 0.66 0.586839
Target:  5'- --cGCCG-AGCGUCCgACGCUGGcGUUa -3'
miRNA:   3'- agcCGGCuUCGCAGG-UGCGGCU-CAAg -5'
24946 5' -57.8 NC_005284.1 + 14598 0.66 0.565499
Target:  5'- gUCGGCgCGaAAGUGUUCcgGCGCCGAa--- -3'
miRNA:   3'- -AGCCG-GC-UUCGCAGG--UGCGGCUcaag -5'
24946 5' -57.8 NC_005284.1 + 11934 0.66 0.564437
Target:  5'- aUGGCCGAggaGGCGcugacgaguucguUCCGCaauGCCGAGg-- -3'
miRNA:   3'- aGCCGGCU---UCGC-------------AGGUG---CGGCUCaag -5'
24946 5' -57.8 NC_005284.1 + 37137 0.67 0.544367
Target:  5'- gCGGUCGAGGaCGUCUACGgCaGGggCa -3'
miRNA:   3'- aGCCGGCUUC-GCAGGUGCgGcUCaaG- -5'
24946 5' -57.8 NC_005284.1 + 38653 0.67 0.533896
Target:  5'- cUCGGCCGAacGGcCGUCU-CGCuCGGGcuUUCg -3'
miRNA:   3'- -AGCCGGCU--UC-GCAGGuGCG-GCUC--AAG- -5'
24946 5' -57.8 NC_005284.1 + 7372 0.67 0.513178
Target:  5'- gCGGCCGAucuGGCGUUCGuCGauCUGAGUg- -3'
miRNA:   3'- aGCCGGCU---UCGCAGGU-GC--GGCUCAag -5'
24946 5' -57.8 NC_005284.1 + 11669 0.67 0.513178
Target:  5'- cUCGGCCGcguagucgccGAGC-UCCGCGUCGA--UCu -3'
miRNA:   3'- -AGCCGGC----------UUCGcAGGUGCGGCUcaAG- -5'
24946 5' -57.8 NC_005284.1 + 14719 0.67 0.513178
Target:  5'- cCGGCCGGaaaauucacGGCGUCgagguaGCGCgCGAgcGUUCg -3'
miRNA:   3'- aGCCGGCU---------UCGCAGg-----UGCG-GCU--CAAG- -5'
24946 5' -57.8 NC_005284.1 + 17322 0.67 0.502942
Target:  5'- -aGGCCGuAGUagacCCACGCCGGauuGUUCg -3'
miRNA:   3'- agCCGGCuUCGca--GGUGCGGCU---CAAG- -5'
24946 5' -57.8 NC_005284.1 + 48963 0.68 0.482746
Target:  5'- uUCGccGCCGGGcGUGUCCacgGCGCCGAcUUCu -3'
miRNA:   3'- -AGC--CGGCUU-CGCAGG---UGCGGCUcAAG- -5'
24946 5' -57.8 NC_005284.1 + 46131 0.68 0.472796
Target:  5'- -aGGCCGGAGCG-CUugcCGUCGAGg-- -3'
miRNA:   3'- agCCGGCUUCGCaGGu--GCGGCUCaag -5'
24946 5' -57.8 NC_005284.1 + 34145 0.68 0.453212
Target:  5'- gCGGCCGAGGCGuauuUCCGaGCCGcGa-- -3'
miRNA:   3'- aGCCGGCUUCGC----AGGUgCGGCuCaag -5'
24946 5' -57.8 NC_005284.1 + 6819 0.7 0.379627
Target:  5'- -aGGCCGAgggGGCGaUUCGCaCCGAGUUg -3'
miRNA:   3'- agCCGGCU---UCGC-AGGUGcGGCUCAAg -5'
24946 5' -57.8 NC_005284.1 + 43964 0.7 0.371007
Target:  5'- cCGGCCGGAGCGUUucgcacacgaCGCGCgGA--UCa -3'
miRNA:   3'- aGCCGGCUUCGCAG----------GUGCGgCUcaAG- -5'
24946 5' -57.8 NC_005284.1 + 38590 0.71 0.329943
Target:  5'- uUCGGCCG-AGCG-CaCGCGgCGAGUa- -3'
miRNA:   3'- -AGCCGGCuUCGCaG-GUGCgGCUCAag -5'
24946 5' -57.8 NC_005284.1 + 16022 0.71 0.314482
Target:  5'- -aGGCCG--GCGUCgCGCGCCGAcgUCa -3'
miRNA:   3'- agCCGGCuuCGCAG-GUGCGGCUcaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.