Results 1 - 20 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 6819 | 0.7 | 0.379627 |
Target: 5'- -aGGCCGAgggGGCGaUUCGCaCCGAGUUg -3' miRNA: 3'- agCCGGCU---UCGC-AGGUGcGGCUCAAg -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 7091 | 0.71 | 0.30473 |
Target: 5'- aCGGCCGccagucagcccggcGAGCG-CCAUGUCGAGcgCg -3' miRNA: 3'- aGCCGGC--------------UUCGCaGGUGCGGCUCaaG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 7372 | 0.67 | 0.513178 |
Target: 5'- gCGGCCGAucuGGCGUUCGuCGauCUGAGUg- -3' miRNA: 3'- aGCCGGCU---UCGCAGGU-GC--GGCUCAag -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 8801 | 0.66 | 0.608324 |
Target: 5'- gCGGaUCGAAcuGCGcgCCGCGUCGAGcgCg -3' miRNA: 3'- aGCC-GGCUU--CGCa-GGUGCGGCUCaaG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 9507 | 0.79 | 0.095957 |
Target: 5'- cCGGCCGcGAGCGa-CACGCCGAGUUUc -3' miRNA: 3'- aGCCGGC-UUCGCagGUGCGGCUCAAG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 11669 | 0.67 | 0.513178 |
Target: 5'- cUCGGCCGcguagucgccGAGC-UCCGCGUCGA--UCu -3' miRNA: 3'- -AGCCGGC----------UUCGcAGGUGCGGCUcaAG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 11802 | 0.77 | 0.130024 |
Target: 5'- aCGGCCGAGGCGgagcaggUCGCGCgCGAGcgCg -3' miRNA: 3'- aGCCGGCUUCGCa------GGUGCG-GCUCaaG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 11934 | 0.66 | 0.564437 |
Target: 5'- aUGGCCGAggaGGCGcugacgaguucguUCCGCaauGCCGAGg-- -3' miRNA: 3'- aGCCGGCU---UCGC-------------AGGUG---CGGCUCaag -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 14598 | 0.66 | 0.565499 |
Target: 5'- gUCGGCgCGaAAGUGUUCcgGCGCCGAa--- -3' miRNA: 3'- -AGCCG-GC-UUCGCAGG--UGCGGCUcaag -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 14719 | 0.67 | 0.513178 |
Target: 5'- cCGGCCGGaaaauucacGGCGUCgagguaGCGCgCGAgcGUUCg -3' miRNA: 3'- aGCCGGCU---------UCGCAGg-----UGCG-GCU--CAAG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 16022 | 0.71 | 0.314482 |
Target: 5'- -aGGCCG--GCGUCgCGCGCCGAcgUCa -3' miRNA: 3'- agCCGGCuuCGCAG-GUGCGGCUcaAG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 17322 | 0.67 | 0.502942 |
Target: 5'- -aGGCCGuAGUagacCCACGCCGGauuGUUCg -3' miRNA: 3'- agCCGGCuUCGca--GGUGCGGCU---CAAG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 27522 | 0.73 | 0.233219 |
Target: 5'- gCGcGUCGAGGCGuUCCuCGCgGGGUUCg -3' miRNA: 3'- aGC-CGGCUUCGC-AGGuGCGgCUCAAG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 30251 | 0.66 | 0.597567 |
Target: 5'- gUCGGCCGucGAGCGggcgcguucgUUCGCuGUCGAGUg- -3' miRNA: 3'- -AGCCGGC--UUCGC----------AGGUG-CGGCUCAag -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 31080 | 0.66 | 0.597567 |
Target: 5'- gCGGCUccaucgacagGAAGCGUaCGCGCgCGGGUa- -3' miRNA: 3'- aGCCGG----------CUUCGCAgGUGCG-GCUCAag -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 32338 | 1.09 | 0.000561 |
Target: 5'- gUCGGCCGAAGCGUCCACGCCGAGUUCu -3' miRNA: 3'- -AGCCGGCUUCGCAGGUGCGGCUCAAG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 33767 | 0.66 | 0.597567 |
Target: 5'- uUCuGUCGAAGUGcgCCgGCGCCGAcUUCg -3' miRNA: 3'- -AGcCGGCUUCGCa-GG-UGCGGCUcAAG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 34145 | 0.68 | 0.453212 |
Target: 5'- gCGGCCGAGGCGuauuUCCGaGCCGcGa-- -3' miRNA: 3'- aGCCGGCUUCGC----AGGUgCGGCuCaag -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 37137 | 0.67 | 0.544367 |
Target: 5'- gCGGUCGAGGaCGUCUACGgCaGGggCa -3' miRNA: 3'- aGCCGGCUUC-GCAGGUGCgGcUCaaG- -5' |
|||||||
24946 | 5' | -57.8 | NC_005284.1 | + | 38590 | 0.71 | 0.329943 |
Target: 5'- uUCGGCCG-AGCG-CaCGCGgCGAGUa- -3' miRNA: 3'- -AGCCGGCuUCGCaG-GUGCgGCUCAag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home