miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24948 3' -57.5 NC_005284.1 + 10705 0.66 0.587702
Target:  5'- cGcCgCCGCUCGUCGCCgaCACGAaGCg- -3'
miRNA:   3'- aCuG-GGUGAGUAGCGG--GUGCUgCGaa -5'
24948 3' -57.5 NC_005284.1 + 54717 0.66 0.57684
Target:  5'- gUGGCCCGuccgUCGUUGCCCGCccggcgGAUGCg- -3'
miRNA:   3'- -ACUGGGUg---AGUAGCGGGUG------CUGCGaa -5'
24948 3' -57.5 NC_005284.1 + 6334 0.66 0.57684
Target:  5'- --uCCCACUCAaaaagcgaacguUCGCCCACacacuGGCGUg- -3'
miRNA:   3'- acuGGGUGAGU------------AGCGGGUG-----CUGCGaa -5'
24948 3' -57.5 NC_005284.1 + 8989 0.66 0.57684
Target:  5'- cGGCCCGCUUGUCa-CCACGAUcaGCa- -3'
miRNA:   3'- aCUGGGUGAGUAGcgGGUGCUG--CGaa -5'
24948 3' -57.5 NC_005284.1 + 10937 0.66 0.55526
Target:  5'- aGGCCCGCauggccggccUCGUCGCCggacgaGCGgACGCa- -3'
miRNA:   3'- aCUGGGUG----------AGUAGCGGg-----UGC-UGCGaa -5'
24948 3' -57.5 NC_005284.1 + 46785 0.66 0.544558
Target:  5'- -uGCUCAUuggCGUCGCCCaAUGGCGCg- -3'
miRNA:   3'- acUGGGUGa--GUAGCGGG-UGCUGCGaa -5'
24948 3' -57.5 NC_005284.1 + 31518 0.66 0.54136
Target:  5'- gGGCCCggcgcgccgcagcgGCgcaCGUCGCCCGCGaacugGCGCa- -3'
miRNA:   3'- aCUGGG--------------UGa--GUAGCGGGUGC-----UGCGaa -5'
24948 3' -57.5 NC_005284.1 + 31206 0.66 0.533923
Target:  5'- cGAUCuCGCguagCAUCG-CCGCGACGUUg -3'
miRNA:   3'- aCUGG-GUGa---GUAGCgGGUGCUGCGAa -5'
24948 3' -57.5 NC_005284.1 + 10131 0.67 0.492194
Target:  5'- -cGCUCGCUCAcgaGCCUGCGugGCa- -3'
miRNA:   3'- acUGGGUGAGUag-CGGGUGCugCGaa -5'
24948 3' -57.5 NC_005284.1 + 30221 0.67 0.481993
Target:  5'- cUGACCguCUUcaGUCGCgCGCGGCGUg- -3'
miRNA:   3'- -ACUGGguGAG--UAGCGgGUGCUGCGaa -5'
24948 3' -57.5 NC_005284.1 + 21926 0.68 0.452032
Target:  5'- cGGCggCAC-CAUCGCCCACGccggcgGCGCUg -3'
miRNA:   3'- aCUGg-GUGaGUAGCGGGUGC------UGCGAa -5'
24948 3' -57.5 NC_005284.1 + 38979 0.68 0.452032
Target:  5'- cUGAUCCGCgggCugcgCGCUgGCGACGCa- -3'
miRNA:   3'- -ACUGGGUGa--Gua--GCGGgUGCUGCGaa -5'
24948 3' -57.5 NC_005284.1 + 17940 0.68 0.442272
Target:  5'- aGGCgCCGacaaUCGcCGCCgGCGACGCUUc -3'
miRNA:   3'- aCUG-GGUg---AGUaGCGGgUGCUGCGAA- -5'
24948 3' -57.5 NC_005284.1 + 9572 0.68 0.432633
Target:  5'- cGACCCACgcugUCGcCGCCUGCGuCGCc- -3'
miRNA:   3'- aCUGGGUG----AGUaGCGGGUGCuGCGaa -5'
24948 3' -57.5 NC_005284.1 + 34671 0.68 0.423117
Target:  5'- cGuACUCACUCA-CGUUgACGACGCUg -3'
miRNA:   3'- aC-UGGGUGAGUaGCGGgUGCUGCGAa -5'
24948 3' -57.5 NC_005284.1 + 19060 0.69 0.413727
Target:  5'- uUGAgCCuuUCGUCGCCCGCGuagauCGUUg -3'
miRNA:   3'- -ACUgGGugAGUAGCGGGUGCu----GCGAa -5'
24948 3' -57.5 NC_005284.1 + 46110 0.69 0.404468
Target:  5'- aGGCCUGCUCGaCGCCCgGCGACa--- -3'
miRNA:   3'- aCUGGGUGAGUaGCGGG-UGCUGcgaa -5'
24948 3' -57.5 NC_005284.1 + 49976 0.69 0.404468
Target:  5'- cGAUCUGCUCAaucgUCaGCCCGCGGCGg-- -3'
miRNA:   3'- aCUGGGUGAGU----AG-CGGGUGCUGCgaa -5'
24948 3' -57.5 NC_005284.1 + 18956 0.69 0.386346
Target:  5'- --cCCCGC-CAUgGCCgGCGACGCa- -3'
miRNA:   3'- acuGGGUGaGUAgCGGgUGCUGCGaa -5'
24948 3' -57.5 NC_005284.1 + 28142 0.7 0.360187
Target:  5'- uUGGCUCGCUgAUCG-CUACGGCGCc- -3'
miRNA:   3'- -ACUGGGUGAgUAGCgGGUGCUGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.