miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24948 5' -56.7 NC_005284.1 + 46615 0.66 0.636634
Target:  5'- -cGAGCGGcGGGCguucAGUGucUGCGGACGu -3'
miRNA:   3'- caUUCGCCuCUCG----UCGCu-GCGCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 32974 0.66 0.636634
Target:  5'- ---cGCuuGGAGGGCGGCGgucacucgcuccGCaGCGGGCGa -3'
miRNA:   3'- cauuCG--CCUCUCGUCGC------------UG-CGCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 10414 0.66 0.636634
Target:  5'- -cGGGCGGccgaugacgcgcAGucGGCauaucggaauuuGGCGACGCGGGCGg -3'
miRNA:   3'- caUUCGCC------------UC--UCG------------UCGCUGCGCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 50916 0.66 0.614678
Target:  5'- -aGAGCGGAGA-UAGCGcAUG-GGACGu -3'
miRNA:   3'- caUUCGCCUCUcGUCGC-UGCgCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 1962 0.66 0.614678
Target:  5'- -cGAGCGGAGuGCAuuGC-AC-CGGACAc -3'
miRNA:   3'- caUUCGCCUCuCGU--CGcUGcGCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 9636 0.66 0.603718
Target:  5'- --cGGCGGAGGcuuCAGCGcaggccgagcuCGCGGGCAu -3'
miRNA:   3'- cauUCGCCUCUc--GUCGCu----------GCGCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 6865 0.66 0.603718
Target:  5'- uGUGcuCGGAGGGCGGCGGugaGCGuGAUc -3'
miRNA:   3'- -CAUucGCCUCUCGUCGCUg--CGC-CUGu -5'
24948 5' -56.7 NC_005284.1 + 21453 0.66 0.592782
Target:  5'- uGUGAGCGG-GGGCuGUGAUGCcGAa- -3'
miRNA:   3'- -CAUUCGCCuCUCGuCGCUGCGcCUgu -5'
24948 5' -56.7 NC_005284.1 + 25410 0.67 0.528145
Target:  5'- cUAGGCGGGGaAGCAG-GACuGCGGuuAa -3'
miRNA:   3'- cAUUCGCCUC-UCGUCgCUG-CGCCugU- -5'
24948 5' -56.7 NC_005284.1 + 41114 0.68 0.517606
Target:  5'- ---cGCGGAGgaacAGCAGCGucaGUGGAUg -3'
miRNA:   3'- cauuCGCCUC----UCGUCGCug-CGCCUGu -5'
24948 5' -56.7 NC_005284.1 + 51395 0.68 0.507152
Target:  5'- --cAGCGGGcucGAcGCGGCGGaagUGCGGGCAc -3'
miRNA:   3'- cauUCGCCU---CU-CGUCGCU---GCGCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 23343 0.7 0.399212
Target:  5'- gGUGauGGCGGAaAGCGGCGGCGuuGGCc -3'
miRNA:   3'- -CAU--UCGCCUcUCGUCGCUGCgcCUGu -5'
24948 5' -56.7 NC_005284.1 + 2372 0.7 0.398299
Target:  5'- -cGAGCGGAGAGaCGGUGACGgccgauuCGG-CAc -3'
miRNA:   3'- caUUCGCCUCUC-GUCGCUGC-------GCCuGU- -5'
24948 5' -56.7 NC_005284.1 + 23583 0.7 0.372411
Target:  5'- -gGAGCGGGucGAGCGGUucaucGACGCGG-CGg -3'
miRNA:   3'- caUUCGCCU--CUCGUCG-----CUGCGCCuGU- -5'
24948 5' -56.7 NC_005284.1 + 9081 0.71 0.330535
Target:  5'- cGUucGCGGcGGGGCAGUuGCGCGGuCAg -3'
miRNA:   3'- -CAuuCGCC-UCUCGUCGcUGCGCCuGU- -5'
24948 5' -56.7 NC_005284.1 + 14295 0.71 0.322588
Target:  5'- -cAAGCGGAuugccgaauugGAgGCAGCGAagugaccauuacCGCGGACAu -3'
miRNA:   3'- caUUCGCCU-----------CU-CGUCGCU------------GCGCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 54694 0.73 0.238309
Target:  5'- -cGAGCGGuu-GCGGUGACGUGGugGu -3'
miRNA:   3'- caUUCGCCucuCGUCGCUGCGCCugU- -5'
24948 5' -56.7 NC_005284.1 + 36658 0.73 0.238309
Target:  5'- -cGAGgGGAGAGCcG-GGCGCGGGCu -3'
miRNA:   3'- caUUCgCCUCUCGuCgCUGCGCCUGu -5'
24948 5' -56.7 NC_005284.1 + 48871 0.74 0.203539
Target:  5'- --cGGCGGAGaAGuCGGCGcCGUGGACAc -3'
miRNA:   3'- cauUCGCCUC-UC-GUCGCuGCGCCUGU- -5'
24948 5' -56.7 NC_005284.1 + 34468 1.08 0.00076
Target:  5'- gGUAAGCGGAGAGCAGCGACGCGGACAa -3'
miRNA:   3'- -CAUUCGCCUCUCGUCGCUGCGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.