miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24949 3' -51.5 NC_005284.1 + 46521 0.66 0.886928
Target:  5'- -cGGCaUUCGGCGaCGGCGaUCGGu-- -3'
miRNA:   3'- caUCGaAAGCCGUaGCUGC-AGCCuaa -5'
24949 3' -51.5 NC_005284.1 + 34759 0.66 0.871087
Target:  5'- --uGCUUcCGGCG-CGAUGUcCGGAUa -3'
miRNA:   3'- cauCGAAaGCCGUaGCUGCA-GCCUAa -5'
24949 3' -51.5 NC_005284.1 + 14694 0.66 0.871087
Target:  5'- gGUAGCgcgCGaGCGuUCGGCGcCGGAa- -3'
miRNA:   3'- -CAUCGaaaGC-CGU-AGCUGCaGCCUaa -5'
24949 3' -51.5 NC_005284.1 + 7148 0.67 0.845349
Target:  5'- -aAGCcgaUCGGCGUCGgugaACGUCGGc-- -3'
miRNA:   3'- caUCGaa-AGCCGUAGC----UGCAGCCuaa -5'
24949 3' -51.5 NC_005284.1 + 14761 0.67 0.830722
Target:  5'- --uGCUgcgUCGGCAUuucuucguucgggucCGcCGUCGGAUUg -3'
miRNA:   3'- cauCGAa--AGCCGUA---------------GCuGCAGCCUAA- -5'
24949 3' -51.5 NC_005284.1 + 35442 0.67 0.81745
Target:  5'- -aAGCgUUCGGCAUCGAa-UCGGcAUUc -3'
miRNA:   3'- caUCGaAAGCCGUAGCUgcAGCC-UAA- -5'
24949 3' -51.5 NC_005284.1 + 8155 0.68 0.78767
Target:  5'- aGgcGCUcgaaUUCGGCAagcUCGACGUCGa--- -3'
miRNA:   3'- -CauCGA----AAGCCGU---AGCUGCAGCcuaa -5'
24949 3' -51.5 NC_005284.1 + 15367 0.69 0.734727
Target:  5'- aUGGCUcgaUCGGCAUCGACGaCuGGUg -3'
miRNA:   3'- cAUCGAa--AGCCGUAGCUGCaGcCUAa -5'
24949 3' -51.5 NC_005284.1 + 26139 0.69 0.723755
Target:  5'- -cGGCggugUUCGcGCGcUGACGUCGGAa- -3'
miRNA:   3'- caUCGa---AAGC-CGUaGCUGCAGCCUaa -5'
24949 3' -51.5 NC_005284.1 + 24640 0.69 0.712686
Target:  5'- uGUAGCcgUCGGCGUCGGucUGgcCGGAUa -3'
miRNA:   3'- -CAUCGaaAGCCGUAGCU--GCa-GCCUAa -5'
24949 3' -51.5 NC_005284.1 + 47832 0.7 0.656307
Target:  5'- -gGGUgcUCGGCAUUGACGacgCGGAa- -3'
miRNA:   3'- caUCGaaAGCCGUAGCUGCa--GCCUaa -5'
24949 3' -51.5 NC_005284.1 + 15928 0.71 0.599314
Target:  5'- -cGGCUUUcCGGCGUuccUGACGUCGGc-- -3'
miRNA:   3'- caUCGAAA-GCCGUA---GCUGCAGCCuaa -5'
24949 3' -51.5 NC_005284.1 + 35326 1.05 0.003886
Target:  5'- cGUAGCUUUCGGCAUCGACGUCGGAUUc -3'
miRNA:   3'- -CAUCGAAAGCCGUAGCUGCAGCCUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.