miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24950 3' -54.1 NC_005284.1 + 49640 0.66 0.758899
Target:  5'- uCUUGUUGCUUGaucaacucgaaccauCGCgaccgCUCGCGCu -3'
miRNA:   3'- -GAACAACGAGC---------------GCGaccuaGAGCGCG- -5'
24950 3' -54.1 NC_005284.1 + 37713 0.66 0.744256
Target:  5'- --cGUcGCggcCGUGCUGuuUCUCGUGCu -3'
miRNA:   3'- gaaCAaCGa--GCGCGACcuAGAGCGCG- -5'
24950 3' -54.1 NC_005284.1 + 16171 0.67 0.712154
Target:  5'- -aUGggGCUCggcgcgucgaugGCGCUGGGcggcaUCGUGCa -3'
miRNA:   3'- gaACaaCGAG------------CGCGACCUag---AGCGCG- -5'
24950 3' -54.1 NC_005284.1 + 16113 0.68 0.679328
Target:  5'- --cGUUGCcguuggCGCGgUGGcgacguucgGUUUCGCGCa -3'
miRNA:   3'- gaaCAACGa-----GCGCgACC---------UAGAGCGCG- -5'
24950 3' -54.1 NC_005284.1 + 39065 0.68 0.646088
Target:  5'- --cGUUGCgucgccagCGCGCagcccgcGGAUCagcaUCGCGCa -3'
miRNA:   3'- gaaCAACGa-------GCGCGa------CCUAG----AGCGCG- -5'
24950 3' -54.1 NC_005284.1 + 21600 0.68 0.646088
Target:  5'- ----aUGCcgaaGCGUUGGGcaagaUCUCGCGCg -3'
miRNA:   3'- gaacaACGag--CGCGACCU-----AGAGCGCG- -5'
24950 3' -54.1 NC_005284.1 + 1618 0.71 0.493494
Target:  5'- aUUGcgUGCUCGCGCUcGAcauggCGCGCa -3'
miRNA:   3'- gAACa-ACGAGCGCGAcCUaga--GCGCG- -5'
24950 3' -54.1 NC_005284.1 + 8240 0.72 0.423316
Target:  5'- -aUGUcGCUCGCGCUGcGG-CUCG-GCa -3'
miRNA:   3'- gaACAaCGAGCGCGAC-CUaGAGCgCG- -5'
24950 3' -54.1 NC_005284.1 + 32741 0.78 0.173896
Target:  5'- cCUUGUUGCUUGcCGCgaucaguucaGGAUCgUCGCGCu -3'
miRNA:   3'- -GAACAACGAGC-GCGa---------CCUAG-AGCGCG- -5'
24950 3' -54.1 NC_005284.1 + 35451 0.95 0.012489
Target:  5'- cCUUGUUcgUCGCGCUGGAUCUCGCGCg -3'
miRNA:   3'- -GAACAAcgAGCGCGACCUAGAGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.