Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24950 | 5' | -52.6 | NC_005284.1 | + | 35490 | 1.07 | 0.00215 |
Target: 5'- uUUGCUCGCAACCCUUCGAGCGAAACGa -3' miRNA: 3'- -AACGAGCGUUGGGAAGCUCGCUUUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 32534 | 0.82 | 0.118132 |
Target: 5'- -gGCUCGCcACCCUcgcggCGGGCGggGCGg -3' miRNA: 3'- aaCGAGCGuUGGGAa----GCUCGCuuUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 5878 | 0.79 | 0.191247 |
Target: 5'- gUGCaagCGCAACC--UCGAGCGAAACGa -3' miRNA: 3'- aACGa--GCGUUGGgaAGCUCGCUUUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 3374 | 0.73 | 0.414313 |
Target: 5'- -gGCUCGCAacaGCCCUUCGA-CGGAGa- -3' miRNA: 3'- aaCGAGCGU---UGGGAAGCUcGCUUUgc -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 37797 | 0.71 | 0.517141 |
Target: 5'- ----gCGCGGCCUUUCG-GCGggGCGg -3' miRNA: 3'- aacgaGCGUUGGGAAGCuCGCuuUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 25275 | 0.71 | 0.538977 |
Target: 5'- ---gUCGCAACCuUUUCGGGCGAAcCGg -3' miRNA: 3'- aacgAGCGUUGG-GAAGCUCGCUUuGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 9733 | 0.71 | 0.550013 |
Target: 5'- -cGCUCGCAugCCcgCGAGCucGGCc -3' miRNA: 3'- aaCGAGCGUugGGaaGCUCGcuUUGc -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 9660 | 0.71 | 0.561118 |
Target: 5'- -aGCUCGCGGgCaugCGAGCGAuGCGc -3' miRNA: 3'- aaCGAGCGUUgGgaaGCUCGCUuUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 45649 | 0.7 | 0.594762 |
Target: 5'- -gGCUgGCGGCUCgUCGGugcGCGAGGCGg -3' miRNA: 3'- aaCGAgCGUUGGGaAGCU---CGCUUUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 25229 | 0.7 | 0.617374 |
Target: 5'- cUUGCUCGCGAuCCCUuucUUGAGgCGGGAa- -3' miRNA: 3'- -AACGAGCGUU-GGGA---AGCUC-GCUUUgc -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 23262 | 0.69 | 0.628706 |
Target: 5'- -aGCU-GCAGCCaucacaCGAGCGGAACGc -3' miRNA: 3'- aaCGAgCGUUGGgaa---GCUCGCUUUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 15094 | 0.69 | 0.640041 |
Target: 5'- -cGCUCGCAgaguAUCCgcgCGAGUGcuGCGg -3' miRNA: 3'- aaCGAGCGU----UGGGaa-GCUCGCuuUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 33395 | 0.69 | 0.662676 |
Target: 5'- -gGCUCGCcaucACCCgauUCGAGauaGAAGCa -3' miRNA: 3'- aaCGAGCGu---UGGGa--AGCUCg--CUUUGc -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 11190 | 0.69 | 0.673954 |
Target: 5'- -cGCggaaaGCAAgCCUUCGA-CGAGACGg -3' miRNA: 3'- aaCGag---CGUUgGGAAGCUcGCUUUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 10049 | 0.69 | 0.685191 |
Target: 5'- -cGCUUGCcacgcaGGCUCgugagCGAGCGGAACGc -3' miRNA: 3'- aaCGAGCG------UUGGGaa---GCUCGCUUUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 15501 | 0.68 | 0.70749 |
Target: 5'- -gGCgUCGCGuuACCCgacuUCGAGCGcgaGGACGa -3' miRNA: 3'- aaCG-AGCGU--UGGGa---AGCUCGC---UUUGC- -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 1705 | 0.68 | 0.718528 |
Target: 5'- -aGCUUGCGcGCCaugUCGAGCGcGAGCa -3' miRNA: 3'- aaCGAGCGU-UGGga-AGCUCGC-UUUGc -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 21347 | 0.68 | 0.718528 |
Target: 5'- -gGCgCGCGGCCCgaugUUGuaGGCGAAGCu -3' miRNA: 3'- aaCGaGCGUUGGGa---AGC--UCGCUUUGc -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 51140 | 0.68 | 0.718528 |
Target: 5'- -aGCUCGacACCC-UCGAGCGGAcaGCc -3' miRNA: 3'- aaCGAGCguUGGGaAGCUCGCUU--UGc -5' |
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24950 | 5' | -52.6 | NC_005284.1 | + | 14850 | 0.67 | 0.761649 |
Target: 5'- gUUGCUgGCcACCgaagUCGAGCGGcGACGa -3' miRNA: 3'- -AACGAgCGuUGGga--AGCUCGCU-UUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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