miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24950 5' -52.6 NC_005284.1 + 35490 1.07 0.00215
Target:  5'- uUUGCUCGCAACCCUUCGAGCGAAACGa -3'
miRNA:   3'- -AACGAGCGUUGGGAAGCUCGCUUUGC- -5'
24950 5' -52.6 NC_005284.1 + 32534 0.82 0.118132
Target:  5'- -gGCUCGCcACCCUcgcggCGGGCGggGCGg -3'
miRNA:   3'- aaCGAGCGuUGGGAa----GCUCGCuuUGC- -5'
24950 5' -52.6 NC_005284.1 + 5878 0.79 0.191247
Target:  5'- gUGCaagCGCAACC--UCGAGCGAAACGa -3'
miRNA:   3'- aACGa--GCGUUGGgaAGCUCGCUUUGC- -5'
24950 5' -52.6 NC_005284.1 + 3374 0.73 0.414313
Target:  5'- -gGCUCGCAacaGCCCUUCGA-CGGAGa- -3'
miRNA:   3'- aaCGAGCGU---UGGGAAGCUcGCUUUgc -5'
24950 5' -52.6 NC_005284.1 + 37797 0.71 0.517141
Target:  5'- ----gCGCGGCCUUUCG-GCGggGCGg -3'
miRNA:   3'- aacgaGCGUUGGGAAGCuCGCuuUGC- -5'
24950 5' -52.6 NC_005284.1 + 25275 0.71 0.538977
Target:  5'- ---gUCGCAACCuUUUCGGGCGAAcCGg -3'
miRNA:   3'- aacgAGCGUUGG-GAAGCUCGCUUuGC- -5'
24950 5' -52.6 NC_005284.1 + 9733 0.71 0.550013
Target:  5'- -cGCUCGCAugCCcgCGAGCucGGCc -3'
miRNA:   3'- aaCGAGCGUugGGaaGCUCGcuUUGc -5'
24950 5' -52.6 NC_005284.1 + 9660 0.71 0.561118
Target:  5'- -aGCUCGCGGgCaugCGAGCGAuGCGc -3'
miRNA:   3'- aaCGAGCGUUgGgaaGCUCGCUuUGC- -5'
24950 5' -52.6 NC_005284.1 + 45649 0.7 0.594762
Target:  5'- -gGCUgGCGGCUCgUCGGugcGCGAGGCGg -3'
miRNA:   3'- aaCGAgCGUUGGGaAGCU---CGCUUUGC- -5'
24950 5' -52.6 NC_005284.1 + 25229 0.7 0.617374
Target:  5'- cUUGCUCGCGAuCCCUuucUUGAGgCGGGAa- -3'
miRNA:   3'- -AACGAGCGUU-GGGA---AGCUC-GCUUUgc -5'
24950 5' -52.6 NC_005284.1 + 23262 0.69 0.628706
Target:  5'- -aGCU-GCAGCCaucacaCGAGCGGAACGc -3'
miRNA:   3'- aaCGAgCGUUGGgaa---GCUCGCUUUGC- -5'
24950 5' -52.6 NC_005284.1 + 15094 0.69 0.640041
Target:  5'- -cGCUCGCAgaguAUCCgcgCGAGUGcuGCGg -3'
miRNA:   3'- aaCGAGCGU----UGGGaa-GCUCGCuuUGC- -5'
24950 5' -52.6 NC_005284.1 + 33395 0.69 0.662676
Target:  5'- -gGCUCGCcaucACCCgauUCGAGauaGAAGCa -3'
miRNA:   3'- aaCGAGCGu---UGGGa--AGCUCg--CUUUGc -5'
24950 5' -52.6 NC_005284.1 + 11190 0.69 0.673954
Target:  5'- -cGCggaaaGCAAgCCUUCGA-CGAGACGg -3'
miRNA:   3'- aaCGag---CGUUgGGAAGCUcGCUUUGC- -5'
24950 5' -52.6 NC_005284.1 + 10049 0.69 0.685191
Target:  5'- -cGCUUGCcacgcaGGCUCgugagCGAGCGGAACGc -3'
miRNA:   3'- aaCGAGCG------UUGGGaa---GCUCGCUUUGC- -5'
24950 5' -52.6 NC_005284.1 + 15501 0.68 0.70749
Target:  5'- -gGCgUCGCGuuACCCgacuUCGAGCGcgaGGACGa -3'
miRNA:   3'- aaCG-AGCGU--UGGGa---AGCUCGC---UUUGC- -5'
24950 5' -52.6 NC_005284.1 + 1705 0.68 0.718528
Target:  5'- -aGCUUGCGcGCCaugUCGAGCGcGAGCa -3'
miRNA:   3'- aaCGAGCGU-UGGga-AGCUCGC-UUUGc -5'
24950 5' -52.6 NC_005284.1 + 21347 0.68 0.718528
Target:  5'- -gGCgCGCGGCCCgaugUUGuaGGCGAAGCu -3'
miRNA:   3'- aaCGaGCGUUGGGa---AGC--UCGCUUUGc -5'
24950 5' -52.6 NC_005284.1 + 51140 0.68 0.718528
Target:  5'- -aGCUCGacACCC-UCGAGCGGAcaGCc -3'
miRNA:   3'- aaCGAGCguUGGGaAGCUCGCUU--UGc -5'
24950 5' -52.6 NC_005284.1 + 14850 0.67 0.761649
Target:  5'- gUUGCUgGCcACCgaagUCGAGCGGcGACGa -3'
miRNA:   3'- -AACGAgCGuUGGga--AGCUCGCU-UUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.