miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24951 3' -62.7 NC_005284.1 + 36570 1.04 0.000416
Target:  5'- cAACCGCCACCGCCGAGCGUCCGCUCUu -3'
miRNA:   3'- -UUGGCGGUGGCGGCUCGCAGGCGAGA- -5'
24951 3' -62.7 NC_005284.1 + 37077 0.66 0.314134
Target:  5'- cGACCGCCAUcgacgCGCCGgcgagauucagGGCGUCgCGCa-- -3'
miRNA:   3'- -UUGGCGGUG-----GCGGC-----------UCGCAG-GCGaga -5'
24951 3' -62.7 NC_005284.1 + 40176 0.66 0.314134
Target:  5'- gAACCGCCACgugCGUCGcgaccaacuccGGCGUCCucugGCUCc -3'
miRNA:   3'- -UUGGCGGUG---GCGGC-----------UCGCAGG----CGAGa -5'
24951 3' -62.7 NC_005284.1 + 33776 0.66 0.304587
Target:  5'- aGugCGCCGgCGCCGAcuucguagucgaucGCG-CCGUUCg -3'
miRNA:   3'- -UugGCGGUgGCGGCU--------------CGCaGGCGAGa -5'
24951 3' -62.7 NC_005284.1 + 18561 0.67 0.299539
Target:  5'- -uCCGCCGCCGUCGGuCGUgUCGCUg- -3'
miRNA:   3'- uuGGCGGUGGCGGCUcGCA-GGCGAga -5'
24951 3' -62.7 NC_005284.1 + 12820 0.67 0.292441
Target:  5'- --aCGCCGCCGCUucGCGcCCGCg-- -3'
miRNA:   3'- uugGCGGUGGCGGcuCGCaGGCGaga -5'
24951 3' -62.7 NC_005284.1 + 17881 0.67 0.285475
Target:  5'- cGGCCGCCggAUCGgCGGGCGcaUCCGCg-- -3'
miRNA:   3'- -UUGGCGG--UGGCgGCUCGC--AGGCGaga -5'
24951 3' -62.7 NC_005284.1 + 37719 0.67 0.271937
Target:  5'- gGGCCGCC-CCGCCGAaaGgCCGCg-- -3'
miRNA:   3'- -UUGGCGGuGGCGGCUcgCaGGCGaga -5'
24951 3' -62.7 NC_005284.1 + 10014 0.67 0.265364
Target:  5'- gGACCGCgGCCuugcgcaaGCCGAGCGugaugUCgCGCUUg -3'
miRNA:   3'- -UUGGCGgUGG--------CGGCUCGC-----AG-GCGAGa -5'
24951 3' -62.7 NC_005284.1 + 50047 0.68 0.246416
Target:  5'- -uCCGCCGCCGaCUGAGuCG-CCGCa-- -3'
miRNA:   3'- uuGGCGGUGGC-GGCUC-GCaGGCGaga -5'
24951 3' -62.7 NC_005284.1 + 46446 0.78 0.041589
Target:  5'- cGAUCGCCgucgccgaauGCCGCCGAGCGUCCGacgCUg -3'
miRNA:   3'- -UUGGCGG----------UGGCGGCUCGCAGGCga-GA- -5'
24951 3' -62.7 NC_005284.1 + 18268 0.83 0.019926
Target:  5'- cAGCCGCCGCCGUCGAaCGUCCGcCUCUc -3'
miRNA:   3'- -UUGGCGGUGGCGGCUcGCAGGC-GAGA- -5'
24951 3' -62.7 NC_005284.1 + 36581 0.68 0.258283
Target:  5'- cGCUGCCuuaugcgAgCGCUGAGUGUCCGCcCUu -3'
miRNA:   3'- uUGGCGG-------UgGCGGCUCGCAGGCGaGA- -5'
24951 3' -62.7 NC_005284.1 + 11667 0.67 0.265364
Target:  5'- cGGCCGCgUAgUCGCCGAGC-UCCGCgUCg -3'
miRNA:   3'- -UUGGCG-GU-GGCGGCUCGcAGGCG-AGa -5'
24951 3' -62.7 NC_005284.1 + 9995 0.67 0.292441
Target:  5'- cGCCGCUGCUGCgCGAGCGcgagcgaCGCUUc -3'
miRNA:   3'- uUGGCGGUGGCG-GCUCGCag-----GCGAGa -5'
24951 3' -62.7 NC_005284.1 + 14582 0.66 0.32163
Target:  5'- uGGCUGCUGCgCGUCGGaUGUCUGCUCg -3'
miRNA:   3'- -UUGGCGGUG-GCGGCUcGCAGGCGAGa -5'
24951 3' -62.7 NC_005284.1 + 48260 0.66 0.337022
Target:  5'- gAGCUGUCACCGCaaCGGGCGUCacuuCGC-Ca -3'
miRNA:   3'- -UUGGCGGUGGCG--GCUCGCAG----GCGaGa -5'
24951 3' -62.7 NC_005284.1 + 15916 0.66 0.344917
Target:  5'- -uCCGaaaCGCaCGCCGAGCGUgCCGUa-- -3'
miRNA:   3'- uuGGCg--GUG-GCGGCUCGCA-GGCGaga -5'
24951 3' -62.7 NC_005284.1 + 9565 0.66 0.352943
Target:  5'- cGCUGUCGCCGCCu-GCGUcgCCGCg-- -3'
miRNA:   3'- uUGGCGGUGGCGGcuCGCA--GGCGaga -5'
24951 3' -62.7 NC_005284.1 + 10160 0.72 0.122124
Target:  5'- -cCCGCCGCggucgcgguCGCCGcGCGuUCCGCUCg -3'
miRNA:   3'- uuGGCGGUG---------GCGGCuCGC-AGGCGAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.