Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24952 | 3' | -59.1 | NC_005284.1 | + | 37092 | 1.1 | 0.000383 |
Target: 5'- cGCCGGCGAGAUUCAGGGCGUCGCGCAc -3' miRNA: 3'- -CGGCCGCUCUAAGUCCCGCAGCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 45426 | 0.76 | 0.111739 |
Target: 5'- gGCCGGCGAcGAUauUCGcGGCGUCGCGa- -3' miRNA: 3'- -CGGCCGCU-CUA--AGUcCCGCAGCGCgu -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 21326 | 0.73 | 0.206603 |
Target: 5'- uGCgGGCGAcuggCGGGGCGcgugUCGCGCGa -3' miRNA: 3'- -CGgCCGCUcuaaGUCCCGC----AGCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 22864 | 0.72 | 0.240879 |
Target: 5'- aGgCGGCGGGA---AGGGCGUCGaGCGc -3' miRNA: 3'- -CgGCCGCUCUaagUCCCGCAGCgCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 195 | 0.71 | 0.247033 |
Target: 5'- uGUCGGCGAGGcgCGGGGCauGUgggaGCGCGu -3' miRNA: 3'- -CGGCCGCUCUaaGUCCCG--CAg---CGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 10126 | 0.69 | 0.363664 |
Target: 5'- aGCgCGGCGAcGGcgCAGacGGCGcUCGCGCGu -3' miRNA: 3'- -CG-GCCGCU-CUaaGUC--CCGC-AGCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 14721 | 0.68 | 0.380675 |
Target: 5'- uGCCGGCcGGAaaaUUCAcGGCGUcgagguagCGCGCGa -3' miRNA: 3'- -CGGCCGcUCU---AAGUcCCGCA--------GCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 19018 | 0.68 | 0.39732 |
Target: 5'- aUCGGCGGGGUgaUUAGgucgaucGGCG-CGCGCAg -3' miRNA: 3'- cGGCCGCUCUA--AGUC-------CCGCaGCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 26569 | 0.68 | 0.425459 |
Target: 5'- gGCCGGCGAGAgu---GGCGUuCGC-CAc -3' miRNA: 3'- -CGGCCGCUCUaagucCCGCA-GCGcGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 54443 | 0.67 | 0.433848 |
Target: 5'- cCCGGUGcuugcacGGcUUCAucGGGCGUCGUGCc -3' miRNA: 3'- cGGCCGC-------UCuAAGU--CCCGCAGCGCGu -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 16034 | 0.67 | 0.444231 |
Target: 5'- -aCGGCGAacguGAggCc-GGCGUCGCGCGc -3' miRNA: 3'- cgGCCGCU----CUaaGucCCGCAGCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 42277 | 0.67 | 0.444231 |
Target: 5'- cGCCGGUcgucGAGGUcgUCAGGaGCuuuUCGCGUg -3' miRNA: 3'- -CGGCCG----CUCUA--AGUCC-CGc--AGCGCGu -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 4351 | 0.67 | 0.45379 |
Target: 5'- cGCCGGCGAGAa----GGCGcUCGCugaaGCAa -3' miRNA: 3'- -CGGCCGCUCUaagucCCGC-AGCG----CGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 47996 | 0.67 | 0.463459 |
Target: 5'- cGCCauuGCGGaAUUCGcGGGCGUgaCGCGCGu -3' miRNA: 3'- -CGGc--CGCUcUAAGU-CCCGCA--GCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 18894 | 0.67 | 0.473235 |
Target: 5'- cGCCGGCcAGA-UCGGGaaGUCgGCGCu -3' miRNA: 3'- -CGGCCGcUCUaAGUCCcgCAG-CGCGu -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 43558 | 0.67 | 0.473235 |
Target: 5'- uCCGGaCGGGuuucgcccgUCAGGGUgcguaGUCGUGCGa -3' miRNA: 3'- cGGCC-GCUCua-------AGUCCCG-----CAGCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 17878 | 0.66 | 0.503162 |
Target: 5'- gGCCGGCcgccGGA-UCGgcGGGCGcaucCGCGCAg -3' miRNA: 3'- -CGGCCGc---UCUaAGU--CCCGCa---GCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 31970 | 0.66 | 0.503162 |
Target: 5'- gGUCGGCGAaugUCAGGuGaucaGcCGCGCAg -3' miRNA: 3'- -CGGCCGCUcuaAGUCC-Cg---CaGCGCGU- -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 32751 | 0.66 | 0.513321 |
Target: 5'- uGCC-GCGAucaGUUCAGGauCGUCGCGCu -3' miRNA: 3'- -CGGcCGCUc--UAAGUCCc-GCAGCGCGu -5' |
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24952 | 3' | -59.1 | NC_005284.1 | + | 16780 | 0.66 | 0.513321 |
Target: 5'- uGCCGGCGcuacAGcgUCAGGacaCGUCGaacgGCAa -3' miRNA: 3'- -CGGCCGC----UCuaAGUCCc--GCAGCg---CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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