miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24953 3' -54.8 NC_005284.1 + 6740 0.66 0.744256
Target:  5'- cGGCCGucGCcaaaCCCGG-CGCgucuuucugccGAAGUGCUg -3'
miRNA:   3'- -CCGGUuuCG----GGGUCaGUG-----------CUUCACGA- -5'
24953 3' -54.8 NC_005284.1 + 34144 0.66 0.744256
Target:  5'- cGGCCGAGGCguauuuCCgAGcCGCGAAGccaGCg -3'
miRNA:   3'- -CCGGUUUCG------GGgUCaGUGCUUCa--CGa -5'
24953 3' -54.8 NC_005284.1 + 14206 0.66 0.744256
Target:  5'- cGGCCGucGCUgaccuuCCGGUaCACGAAugccgucgguGUGCUg -3'
miRNA:   3'- -CCGGUuuCGG------GGUCA-GUGCUU----------CACGA- -5'
24953 3' -54.8 NC_005284.1 + 1953 0.66 0.722951
Target:  5'- gGGCUGA--CgCCGGUCACGAucGUGCa -3'
miRNA:   3'- -CCGGUUucGgGGUCAGUGCUu-CACGa -5'
24953 3' -54.8 NC_005284.1 + 2622 0.67 0.679328
Target:  5'- cGCgAgaAAGCUCCGGUCGgCGGGuGUGCUc -3'
miRNA:   3'- cCGgU--UUCGGGGUCAGU-GCUU-CACGA- -5'
24953 3' -54.8 NC_005284.1 + 16237 0.67 0.668279
Target:  5'- cGCC-GAGCCCCAucaGCGAuGUGCc -3'
miRNA:   3'- cCGGuUUCGGGGUcagUGCUuCACGa -5'
24953 3' -54.8 NC_005284.1 + 24833 0.68 0.601632
Target:  5'- gGGCCAAAGCCUCAa--GCaGcAGUGCg -3'
miRNA:   3'- -CCGGUUUCGGGGUcagUG-CuUCACGa -5'
24953 3' -54.8 NC_005284.1 + 24027 0.69 0.525174
Target:  5'- uGGaugCAAAGCCCCGGUCgaGCGAccGGgGCa -3'
miRNA:   3'- -CCg--GUUUCGGGGUCAG--UGCU--UCaCGa -5'
24953 3' -54.8 NC_005284.1 + 41373 0.69 0.525174
Target:  5'- cGCCGAGacacGCCCgCGGUCACGAuguuucgcgAGUGgCUa -3'
miRNA:   3'- cCGGUUU----CGGG-GUCAGUGCU---------UCAC-GA- -5'
24953 3' -54.8 NC_005284.1 + 50889 0.69 0.525174
Target:  5'- cGGCCAucGCaCuCCGGaugCGCGAucGGUGCa -3'
miRNA:   3'- -CCGGUuuCG-G-GGUCa--GUGCU--UCACGa -5'
24953 3' -54.8 NC_005284.1 + 854 0.77 0.173896
Target:  5'- uGCCAGGGCUCCAacGUCACGAGuUGCUu -3'
miRNA:   3'- cCGGUUUCGGGGU--CAGUGCUUcACGA- -5'
24953 3' -54.8 NC_005284.1 + 39588 1.09 0.000991
Target:  5'- gGGCCAAAGCCCCAGUCACGAAGUGCUu -3'
miRNA:   3'- -CCGGUUUCGGGGUCAGUGCUUCACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.