Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24953 | 3' | -54.8 | NC_005284.1 | + | 50889 | 0.69 | 0.525174 |
Target: 5'- cGGCCAucGCaCuCCGGaugCGCGAucGGUGCa -3' miRNA: 3'- -CCGGUuuCG-G-GGUCa--GUGCU--UCACGa -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 41373 | 0.69 | 0.525174 |
Target: 5'- cGCCGAGacacGCCCgCGGUCACGAuguuucgcgAGUGgCUa -3' miRNA: 3'- cCGGUUU----CGGG-GUCAGUGCU---------UCAC-GA- -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 39588 | 1.09 | 0.000991 |
Target: 5'- gGGCCAAAGCCCCAGUCACGAAGUGCUu -3' miRNA: 3'- -CCGGUUUCGGGGUCAGUGCUUCACGA- -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 34144 | 0.66 | 0.744256 |
Target: 5'- cGGCCGAGGCguauuuCCgAGcCGCGAAGccaGCg -3' miRNA: 3'- -CCGGUUUCG------GGgUCaGUGCUUCa--CGa -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 24833 | 0.68 | 0.601632 |
Target: 5'- gGGCCAAAGCCUCAa--GCaGcAGUGCg -3' miRNA: 3'- -CCGGUUUCGGGGUcagUG-CuUCACGa -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 24027 | 0.69 | 0.525174 |
Target: 5'- uGGaugCAAAGCCCCGGUCgaGCGAccGGgGCa -3' miRNA: 3'- -CCg--GUUUCGGGGUCAG--UGCU--UCaCGa -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 16237 | 0.67 | 0.668279 |
Target: 5'- cGCC-GAGCCCCAucaGCGAuGUGCc -3' miRNA: 3'- cCGGuUUCGGGGUcagUGCUuCACGa -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 14206 | 0.66 | 0.744256 |
Target: 5'- cGGCCGucGCUgaccuuCCGGUaCACGAAugccgucgguGUGCUg -3' miRNA: 3'- -CCGGUuuCGG------GGUCA-GUGCUU----------CACGA- -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 6740 | 0.66 | 0.744256 |
Target: 5'- cGGCCGucGCcaaaCCCGG-CGCgucuuucugccGAAGUGCUg -3' miRNA: 3'- -CCGGUuuCG----GGGUCaGUG-----------CUUCACGA- -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 2622 | 0.67 | 0.679328 |
Target: 5'- cGCgAgaAAGCUCCGGUCGgCGGGuGUGCUc -3' miRNA: 3'- cCGgU--UUCGGGGUCAGU-GCUU-CACGA- -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 1953 | 0.66 | 0.722951 |
Target: 5'- gGGCUGA--CgCCGGUCACGAucGUGCa -3' miRNA: 3'- -CCGGUUucGgGGUCAGUGCUu-CACGa -5' |
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24953 | 3' | -54.8 | NC_005284.1 | + | 854 | 0.77 | 0.173896 |
Target: 5'- uGCCAGGGCUCCAacGUCACGAGuUGCUu -3' miRNA: 3'- cCGGUUUCGGGGU--CAGUGCUUcACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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