miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24953 5' -54 NC_005284.1 + 10652 0.66 0.806403
Target:  5'- -aAGCgCUgCGCGAGGAaCU--GGUGCg -3'
miRNA:   3'- cgUCG-GAgGCGCUUCUaGAagCCACG- -5'
24953 5' -54 NC_005284.1 + 51651 0.66 0.806403
Target:  5'- cCAGCCaaCGCGAaagguucuGGAUCgcuUCGGaGCg -3'
miRNA:   3'- cGUCGGagGCGCU--------UCUAGa--AGCCaCG- -5'
24953 5' -54 NC_005284.1 + 37510 0.66 0.792838
Target:  5'- cGCGGCCggCUGCGAuaacGUCccggccggcuacgUCGGUGUg -3'
miRNA:   3'- -CGUCGGa-GGCGCUuc--UAGa------------AGCCACG- -5'
24953 5' -54 NC_005284.1 + 575 0.66 0.766787
Target:  5'- aGCAGCUU-CGCGAaaGGGUUgUCgGGUGUu -3'
miRNA:   3'- -CGUCGGAgGCGCU--UCUAGaAG-CCACG- -5'
24953 5' -54 NC_005284.1 + 15177 0.67 0.735565
Target:  5'- cGCAGCaCUCgCGCGGAuacUCUgcgagCGcGUGCg -3'
miRNA:   3'- -CGUCG-GAG-GCGCUUcu-AGAa----GC-CACG- -5'
24953 5' -54 NC_005284.1 + 11264 0.67 0.724933
Target:  5'- aGCGGCUcgcgCgGCGAAGGggggCGGUGUu -3'
miRNA:   3'- -CGUCGGa---GgCGCUUCUagaaGCCACG- -5'
24953 5' -54 NC_005284.1 + 33121 0.67 0.714206
Target:  5'- uGCuGCCUCUGCGugaacGGGUUgaggggCGGcUGCa -3'
miRNA:   3'- -CGuCGGAGGCGCu----UCUAGaa----GCC-ACG- -5'
24953 5' -54 NC_005284.1 + 16657 0.67 0.703398
Target:  5'- aGCgAGCCgUCCGCGuucuGGAUCggC-GUGCc -3'
miRNA:   3'- -CG-UCGG-AGGCGCu---UCUAGaaGcCACG- -5'
24953 5' -54 NC_005284.1 + 45630 0.71 0.486171
Target:  5'- uGCgAGUCUUCGCGggGcaggCUggcggcucgUCGGUGCg -3'
miRNA:   3'- -CG-UCGGAGGCGCuuCua--GA---------AGCCACG- -5'
24953 5' -54 NC_005284.1 + 6681 0.72 0.426439
Target:  5'- cGCAGCUUCC-CGGuuuUCUUCGGcGCg -3'
miRNA:   3'- -CGUCGGAGGcGCUucuAGAAGCCaCG- -5'
24953 5' -54 NC_005284.1 + 35447 0.72 0.416911
Target:  5'- cCAGCCUuguucgUCGCGcuGGAUCUcgcgCGGUGCg -3'
miRNA:   3'- cGUCGGA------GGCGCu-UCUAGAa---GCCACG- -5'
24953 5' -54 NC_005284.1 + 37443 0.81 0.122927
Target:  5'- cGCAGCCggCCGCGAGGAacaUCgUCGGcGCg -3'
miRNA:   3'- -CGUCGGa-GGCGCUUCU---AGaAGCCaCG- -5'
24953 5' -54 NC_005284.1 + 39622 1.13 0.00072
Target:  5'- aGCAGCCUCCGCGAAGAUCUUCGGUGCc -3'
miRNA:   3'- -CGUCGGAGGCGCUUCUAGAAGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.