miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24954 5' -50.1 NC_005284.1 + 40013 0.66 0.946644
Target:  5'- uGUCGGUCGaGUggcUCGAaaacGCagCAGCCGa -3'
miRNA:   3'- -CAGCCAGCaUA---AGCU----CGaaGUUGGCc -5'
24954 5' -50.1 NC_005284.1 + 8645 0.67 0.930985
Target:  5'- uUCGGUCGUAUUCGccguaacGCUgacgaUCAGCuCGc -3'
miRNA:   3'- cAGCCAGCAUAAGCu------CGA-----AGUUG-GCc -5'
24954 5' -50.1 NC_005284.1 + 7205 0.67 0.925188
Target:  5'- cUUGGaacuaUCGg--UCGAGUUUUGACCGGc -3'
miRNA:   3'- cAGCC-----AGCauaAGCUCGAAGUUGGCC- -5'
24954 5' -50.1 NC_005284.1 + 8044 0.67 0.919101
Target:  5'- uUCGuGUCGUGUUCG-GUgaaacGCCGGa -3'
miRNA:   3'- cAGC-CAGCAUAAGCuCGaagu-UGGCC- -5'
24954 5' -50.1 NC_005284.1 + 41168 0.68 0.906062
Target:  5'- uGUCGG-CGaaaUCGGGUUUCGuCCGGc -3'
miRNA:   3'- -CAGCCaGCauaAGCUCGAAGUuGGCC- -5'
24954 5' -50.1 NC_005284.1 + 13221 0.68 0.906062
Target:  5'- --gGGUCGUGaUCaAGUUUCAaGCCGGc -3'
miRNA:   3'- cagCCAGCAUaAGcUCGAAGU-UGGCC- -5'
24954 5' -50.1 NC_005284.1 + 43883 0.68 0.899115
Target:  5'- -gCGcGUCGUGUgCGAaacGCUcCGGCCGGa -3'
miRNA:   3'- caGC-CAGCAUAaGCU---CGAaGUUGGCC- -5'
24954 5' -50.1 NC_005284.1 + 18569 0.68 0.882848
Target:  5'- cGUCGGUCGUGUcgcugacugcggCGGGCaUCGuguaCGGg -3'
miRNA:   3'- -CAGCCAGCAUAa-----------GCUCGaAGUug--GCC- -5'
24954 5' -50.1 NC_005284.1 + 51154 0.7 0.81521
Target:  5'- uUUGGcCGUcgUCGAGCUcgacacccUCGAgCGGa -3'
miRNA:   3'- cAGCCaGCAuaAGCUCGA--------AGUUgGCC- -5'
24954 5' -50.1 NC_005284.1 + 39924 0.7 0.785678
Target:  5'- gGUCGGcugcugCGUuUUCGAGCcacUCGACCGa -3'
miRNA:   3'- -CAGCCa-----GCAuAAGCUCGa--AGUUGGCc -5'
24954 5' -50.1 NC_005284.1 + 39795 1.13 0.002326
Target:  5'- cGUCGGUCGUAUUCGAGCUUCAACCGGg -3'
miRNA:   3'- -CAGCCAGCAUAAGCUCGAAGUUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.