miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24955 5' -55.1 NC_005284.1 + 46605 0.66 0.776684
Target:  5'- cCGAaCGUCccgaGCGGcGGGCGUUCAgugucUGCGg -3'
miRNA:   3'- -GCUaGCAG----CGCCuCCUGCAAGU-----GCGU- -5'
24955 5' -55.1 NC_005284.1 + 12785 0.66 0.765706
Target:  5'- uCGAUCGgcaugcgggCGCGGAgucguucuacuGGACGccgccgcUUCGCGCc -3'
miRNA:   3'- -GCUAGCa--------GCGCCU-----------CCUGC-------AAGUGCGu -5'
24955 5' -55.1 NC_005284.1 + 22854 0.66 0.725574
Target:  5'- uGGUCGUUGaGGcuGACGaUCGCGCGc -3'
miRNA:   3'- gCUAGCAGCgCCucCUGCaAGUGCGU- -5'
24955 5' -55.1 NC_005284.1 + 10404 0.67 0.704415
Target:  5'- aGAggCGUCGCGGGcGGcCGaugaCGCGCAg -3'
miRNA:   3'- gCUa-GCAGCGCCU-CCuGCaa--GUGCGU- -5'
24955 5' -55.1 NC_005284.1 + 47778 0.67 0.693727
Target:  5'- aGAUCGaggcggcgcUCGCGGAGGcgACGggCgaGCGCu -3'
miRNA:   3'- gCUAGC---------AGCGCCUCC--UGCaaG--UGCGu -5'
24955 5' -55.1 NC_005284.1 + 47988 0.67 0.672186
Target:  5'- uCGAUCGacgccaUUGCGGAauucgcGGGCGUgaCGCGCGu -3'
miRNA:   3'- -GCUAGC------AGCGCCU------CCUGCAa-GUGCGU- -5'
24955 5' -55.1 NC_005284.1 + 11581 0.69 0.596157
Target:  5'- aGAUCGaCGCGGAGcucGGCGacUACGCGg -3'
miRNA:   3'- gCUAGCaGCGCCUC---CUGCaaGUGCGU- -5'
24955 5' -55.1 NC_005284.1 + 4668 0.69 0.585343
Target:  5'- uGGUCGUCGCGGAccgucaagcggGGAUcaUUGCGCc -3'
miRNA:   3'- gCUAGCAGCGCCU-----------CCUGcaAGUGCGu -5'
24955 5' -55.1 NC_005284.1 + 5398 0.7 0.531999
Target:  5'- uCGAUCcgUGCGGAGGAaCGccUCGCGCu -3'
miRNA:   3'- -GCUAGcaGCGCCUCCU-GCa-AGUGCGu -5'
24955 5' -55.1 NC_005284.1 + 2585 0.7 0.518401
Target:  5'- uGAUCGUCGCgagcaugcugcuauGGGGGAaUGggUACGCGa -3'
miRNA:   3'- gCUAGCAGCG--------------CCUCCU-GCaaGUGCGU- -5'
24955 5' -55.1 NC_005284.1 + 9920 0.71 0.470497
Target:  5'- uGAUCGcCGCGuAGGGCGUgcccgugaugCGCGCGc -3'
miRNA:   3'- gCUAGCaGCGCcUCCUGCAa---------GUGCGU- -5'
24955 5' -55.1 NC_005284.1 + 27204 0.72 0.431566
Target:  5'- aGAUgCGUCGCGGcGGGCa--CGCGCAa -3'
miRNA:   3'- gCUA-GCAGCGCCuCCUGcaaGUGCGU- -5'
24955 5' -55.1 NC_005284.1 + 32327 0.72 0.385666
Target:  5'- aGAUCGUCGCGcAGG-CGaaaggaUUCACGCGc -3'
miRNA:   3'- gCUAGCAGCGCcUCCuGC------AAGUGCGU- -5'
24955 5' -55.1 NC_005284.1 + 23167 0.74 0.319246
Target:  5'- cCGAUCGUCGCGGc--GCGUUC-CGCu -3'
miRNA:   3'- -GCUAGCAGCGCCuccUGCAAGuGCGu -5'
24955 5' -55.1 NC_005284.1 + 41016 1.09 0.001353
Target:  5'- gCGAUCGUCGCGGAGGACGUUCACGCAu -3'
miRNA:   3'- -GCUAGCAGCGCCUCCUGCAAGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.