miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24956 3' -56.3 NC_005284.1 + 31429 0.67 0.5705
Target:  5'- cGCGgGCGACGugcGCCgcugcggCGCGCCGGg--- -3'
miRNA:   3'- -UGCgUGUUGU---UGGa------GCGCGGCCguaa -5'
24956 3' -56.3 NC_005284.1 + 1073 0.67 0.568307
Target:  5'- cCGCGCcgGGCGaaagaccucccagGCCugcuuuucagucgUCGCGCCGGCGUa -3'
miRNA:   3'- uGCGUG--UUGU-------------UGG-------------AGCGCGGCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 11859 0.67 0.559559
Target:  5'- uUGCAgGcCGACUggCGCGUCGGCGUg -3'
miRNA:   3'- uGCGUgUuGUUGGa-GCGCGGCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 9785 0.67 0.559559
Target:  5'- cACGuCGCAACGGCgCgcgccaaCGuCGCCGGCAg- -3'
miRNA:   3'- -UGC-GUGUUGUUG-Ga------GC-GCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 47263 0.67 0.559559
Target:  5'- gACGgGCGAgAACCUCGUGaucgaCGGCcgUc -3'
miRNA:   3'- -UGCgUGUUgUUGGAGCGCg----GCCGuaA- -5'
24956 3' -56.3 NC_005284.1 + 21721 0.67 0.559559
Target:  5'- gUGCGCGGCGAUCgcaCGCuGCuCGGCGUc -3'
miRNA:   3'- uGCGUGUUGUUGGa--GCG-CG-GCCGUAa -5'
24956 3' -56.3 NC_005284.1 + 10734 0.67 0.559559
Target:  5'- gGCGCGCAcCAGuuCCUCGCGCa-GCGc- -3'
miRNA:   3'- -UGCGUGUuGUU--GGAGCGCGgcCGUaa -5'
24956 3' -56.3 NC_005284.1 + 17838 0.67 0.559559
Target:  5'- gACGUcaGCAGCAGCCagCGCccgaGCCGGUg-- -3'
miRNA:   3'- -UGCG--UGUUGUUGGa-GCG----CGGCCGuaa -5'
24956 3' -56.3 NC_005284.1 + 48205 0.67 0.556288
Target:  5'- uCGCGCAGCGGCCaCGCGUacgugucugucaugUGGCGc- -3'
miRNA:   3'- uGCGUGUUGUUGGaGCGCG--------------GCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 49265 0.67 0.548678
Target:  5'- -aGCG-GGCAGCCUCGCGCa-GCAUUu -3'
miRNA:   3'- ugCGUgUUGUUGGAGCGCGgcCGUAA- -5'
24956 3' -56.3 NC_005284.1 + 9442 0.67 0.537863
Target:  5'- cUGCGCAA--GCCUCGCGCUcGCGc- -3'
miRNA:   3'- uGCGUGUUguUGGAGCGCGGcCGUaa -5'
24956 3' -56.3 NC_005284.1 + 15160 0.67 0.537863
Target:  5'- uGCGCuGCcGCAACCUUGCGgCCGuGCc-- -3'
miRNA:   3'- -UGCG-UGuUGUUGGAGCGC-GGC-CGuaa -5'
24956 3' -56.3 NC_005284.1 + 11256 0.67 0.537863
Target:  5'- aACGCgGCAGCGG-CUCGCG-CGGCGa- -3'
miRNA:   3'- -UGCG-UGUUGUUgGAGCGCgGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 33898 0.67 0.537863
Target:  5'- -gGCGCAACucuCCUgCGUGCgGGCGa- -3'
miRNA:   3'- ugCGUGUUGuu-GGA-GCGCGgCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 37069 0.67 0.537863
Target:  5'- gACGUccuCGACcGCCaucgaCGCGCCGGCGa- -3'
miRNA:   3'- -UGCGu--GUUGuUGGa----GCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 6121 0.67 0.536786
Target:  5'- gACGCccccgagACAACGuCCUCGCGaaaGGCGUa -3'
miRNA:   3'- -UGCG-------UGUUGUuGGAGCGCgg-CCGUAa -5'
24956 3' -56.3 NC_005284.1 + 1284 0.67 0.527123
Target:  5'- cCGUGCuuCGACaa-GCGCCGGCAg- -3'
miRNA:   3'- uGCGUGuuGUUGgagCGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 53447 0.67 0.527123
Target:  5'- cGCGCACAGCuagcaggauACgUCacuGCGCUGGCGa- -3'
miRNA:   3'- -UGCGUGUUGu--------UGgAG---CGCGGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 9586 0.67 0.527123
Target:  5'- aGCGCAgGGCGAUCgcgcugcCGCGgCGGCGa- -3'
miRNA:   3'- -UGCGUgUUGUUGGa------GCGCgGCCGUaa -5'
24956 3' -56.3 NC_005284.1 + 53113 0.68 0.516464
Target:  5'- gGCGCGCuACAucacGCCUCGCa-CGGCGa- -3'
miRNA:   3'- -UGCGUGuUGU----UGGAGCGcgGCCGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.