Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24956 | 5' | -51.8 | NC_005284.1 | + | 52784 | 0.66 | 0.860372 |
Target: 5'- cCAGCGGCCAuacauuauggaagguUCGUGGGaaacgcuUAUCg -3' miRNA: 3'- cGUCGCCGGU---------------AGCACUCgaacu--AUAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 9859 | 0.66 | 0.839223 |
Target: 5'- gGC-GCGcGCCGUugcgaCGUGAGCUUGcgccGUCg -3' miRNA: 3'- -CGuCGC-CGGUA-----GCACUCGAACua--UAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 16518 | 0.66 | 0.881622 |
Target: 5'- uCGGCGGggcCCAUCGUGGGgcUGGUGa- -3' miRNA: 3'- cGUCGCC---GGUAGCACUCgaACUAUag -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 25525 | 0.66 | 0.848206 |
Target: 5'- cGgAGCGGCCGUCGUcGuGCgcgc-GUCg -3' miRNA: 3'- -CgUCGCCGGUAGCA-CuCGaacuaUAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 10018 | 0.66 | 0.848206 |
Target: 5'- --cGCGGCCuugCGcaagccGAGCgUGAUGUCg -3' miRNA: 3'- cguCGCCGGua-GCa-----CUCGaACUAUAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 18588 | 0.66 | 0.839223 |
Target: 5'- uGCGGCGGgCAUCGUGuacggGAUcgAUCu -3' miRNA: 3'- -CGUCGCCgGUAGCACucgaaCUA--UAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 53892 | 0.67 | 0.830006 |
Target: 5'- -gGGCGGCCGUCGUc-GCUUGc---- -3' miRNA: 3'- cgUCGCCGGUAGCAcuCGAACuauag -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 14518 | 0.67 | 0.801063 |
Target: 5'- cGCAGCaGCCAUCGccGAcGCUgcgGGUGg- -3' miRNA: 3'- -CGUCGcCGGUAGCa-CU-CGAa--CUAUag -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 14060 | 0.67 | 0.801063 |
Target: 5'- cGCAGcCGcGCCAUCacuuuuucGAGCguccUGAUGUCg -3' miRNA: 3'- -CGUC-GC-CGGUAGca------CUCGa---ACUAUAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 3554 | 0.68 | 0.738396 |
Target: 5'- cGCAGCcguaGCCGUCGUGuGCUcaccGAgcuUGUCg -3' miRNA: 3'- -CGUCGc---CGGUAGCACuCGAa---CU---AUAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 50087 | 0.69 | 0.727476 |
Target: 5'- aGCAGCGGUaCGUCGUGGGgCgcGAgccuUCg -3' miRNA: 3'- -CGUCGCCG-GUAGCACUC-GaaCUau--AG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 15221 | 0.7 | 0.648884 |
Target: 5'- cGCAGCGGCCGaaGacaUGGGCgaGAUuGUCg -3' miRNA: 3'- -CGUCGCCGGUagC---ACUCGaaCUA-UAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 21733 | 0.7 | 0.648884 |
Target: 5'- cGCGGCGG-CAUCGUGcGCggcGAUcgCa -3' miRNA: 3'- -CGUCGCCgGUAGCACuCGaa-CUAuaG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 11243 | 0.71 | 0.580689 |
Target: 5'- cGCGGCGGCCGcggCGcGAGCUgc--GUCa -3' miRNA: 3'- -CGUCGCCGGUa--GCaCUCGAacuaUAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 39231 | 0.72 | 0.503284 |
Target: 5'- uGCuGCGcucgaUCGUCGUGAGCguggUGAUGUCg -3' miRNA: 3'- -CGuCGCc----GGUAGCACUCGa---ACUAUAG- -5' |
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24956 | 5' | -51.8 | NC_005284.1 | + | 42815 | 1.11 | 0.001341 |
Target: 5'- aGCAGCGGCCAUCGUGAGCUUGAUAUCc -3' miRNA: 3'- -CGUCGCCGGUAGCACUCGAACUAUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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