miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 3' -65.4 NC_005284.1 + 16116 0.67 0.252902
Target:  5'- uGCCGUuggCGCgGUGGCGaCGuUCGguUUCGCGCa -3'
miRNA:   3'- -CGGCG---GCG-CACCGC-GC-AGC--GGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 6360 0.67 0.252902
Target:  5'- uGCaCGCgGCGauUGGCGCGUC-UUCGCaGCc -3'
miRNA:   3'- -CG-GCGgCGC--ACCGCGCAGcGGGCG-CG- -5'
24957 3' -65.4 NC_005284.1 + 14597 0.67 0.252902
Target:  5'- cGUCGgCGCGaaaguguuccGGCGCcgaaCGCUCGCGCg -3'
miRNA:   3'- -CGGCgGCGCa---------CCGCGca--GCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 46231 0.67 0.246926
Target:  5'- gGCCGaCCGCGggugGGaUGCGgaauggaCGCaucuaCGCGCg -3'
miRNA:   3'- -CGGC-GGCGCa---CC-GCGCa------GCGg----GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 45549 0.67 0.246926
Target:  5'- uGCCGCC-CGccGCGCG-CGUCaGCGCc -3'
miRNA:   3'- -CGGCGGcGCacCGCGCaGCGGgCGCG- -5'
24957 3' -65.4 NC_005284.1 + 5508 0.67 0.246334
Target:  5'- aGCgGCCGUGaaGCGCGcuucgucacgUCGCCuccugauCGCGCg -3'
miRNA:   3'- -CGgCGGCGCacCGCGC----------AGCGG-------GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 32916 0.67 0.241067
Target:  5'- aCCGCUGCGUcgacgucugauaGGCgGCGgcaccaUCGCCCaCGCc -3'
miRNA:   3'- cGGCGGCGCA------------CCG-CGC------AGCGGGcGCG- -5'
24957 3' -65.4 NC_005284.1 + 43208 0.67 0.241067
Target:  5'- aGUCGCCGagcucCGCGUCGaUCUGCGCa -3'
miRNA:   3'- -CGGCGGCgcaccGCGCAGC-GGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 16942 0.67 0.240487
Target:  5'- aGCUGCCGCGcgcaaaaaaUGGUuguugauccGCGUgCGCCgcaucacgccgaaCGCGCa -3'
miRNA:   3'- -CGGCGGCGC---------ACCG---------CGCA-GCGG-------------GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 21321 0.67 0.237608
Target:  5'- cGCCgGCCGac-GGCGCGuguaagcacugcggaUCGacuaCCGCGCa -3'
miRNA:   3'- -CGG-CGGCgcaCCGCGC---------------AGCg---GGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 42976 0.67 0.235324
Target:  5'- uUUGCCGCG-GGgGCGUUGCaguCCGUGa -3'
miRNA:   3'- cGGCGGCGCaCCgCGCAGCG---GGCGCg -5'
24957 3' -65.4 NC_005284.1 + 47734 0.67 0.235324
Target:  5'- gGCCGUgcucgGCGguacggcgGcGCGCGUaCGUCCGCGUa -3'
miRNA:   3'- -CGGCGg----CGCa-------C-CGCGCA-GCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 48252 0.67 0.235324
Target:  5'- -aCGCUGac-GGCGCGUUGCC-GUGCg -3'
miRNA:   3'- cgGCGGCgcaCCGCGCAGCGGgCGCG- -5'
24957 3' -65.4 NC_005284.1 + 30640 0.67 0.234756
Target:  5'- aGCCGaCCacacgccccccauGCGUGGuCGUGUCcCCCuCGCa -3'
miRNA:   3'- -CGGC-GG-------------CGCACC-GCGCAGcGGGcGCG- -5'
24957 3' -65.4 NC_005284.1 + 16200 0.67 0.233624
Target:  5'- cUCGCCGCGUGcGCuCGgccgaacggccgucUCGCUCGgGCu -3'
miRNA:   3'- cGGCGGCGCAC-CGcGC--------------AGCGGGCgCG- -5'
24957 3' -65.4 NC_005284.1 + 12282 0.67 0.229697
Target:  5'- -gCGCCGCaGUGGUGuCGcagccgggCGUgCGCGCa -3'
miRNA:   3'- cgGCGGCG-CACCGC-GCa-------GCGgGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 44161 0.67 0.228031
Target:  5'- cGCCGCCGCucGUcgccgacacgaagcGGuCGaucaGUCGCCCgaucucGCGCg -3'
miRNA:   3'- -CGGCGGCG--CA--------------CC-GCg---CAGCGGG------CGCG- -5'
24957 3' -65.4 NC_005284.1 + 9223 0.67 0.224184
Target:  5'- aGCCGagugCGCG-GGCGaCG-CGCCaCGCGg -3'
miRNA:   3'- -CGGCg---GCGCaCCGC-GCaGCGG-GCGCg -5'
24957 3' -65.4 NC_005284.1 + 8108 0.67 0.224184
Target:  5'- cGCgGUCGCGgcGGCGU-UCGgcCCCGUGCa -3'
miRNA:   3'- -CGgCGGCGCa-CCGCGcAGC--GGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 43545 0.67 0.224184
Target:  5'- cGCUGCCGCGuUGGUcgacacacGUGcUGUCUGUGCa -3'
miRNA:   3'- -CGGCGGCGC-ACCG--------CGCaGCGGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.