miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 5' -52.8 NC_005284.1 + 4549 0.67 0.797039
Target:  5'- gCGuCGCCgu-UCGCGU-CAgGCUGCUg -3'
miRNA:   3'- -GCuGCGGacuAGUGUAuGUgCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 14615 0.67 0.797039
Target:  5'- cCGGCGCC-GAaCGCucGCGCGCUaccucgacGCCg -3'
miRNA:   3'- -GCUGCGGaCUaGUGuaUGUGCGA--------CGG- -5'
24957 5' -52.8 NC_005284.1 + 17488 0.67 0.796056
Target:  5'- gGGCGCCgggucggUGGUCGCGUcgGC-CGauaUGCCg -3'
miRNA:   3'- gCUGCGG-------ACUAGUGUA--UGuGCg--ACGG- -5'
24957 5' -52.8 NC_005284.1 + 21982 0.67 0.78713
Target:  5'- cCGACGCCgcccCGCAaccCGCGCagGCCg -3'
miRNA:   3'- -GCUGCGGacuaGUGUau-GUGCGa-CGG- -5'
24957 5' -52.8 NC_005284.1 + 49015 0.67 0.78713
Target:  5'- uCGGCGUUUGGUCGgcCAUuUACGgaGCCc -3'
miRNA:   3'- -GCUGCGGACUAGU--GUAuGUGCgaCGG- -5'
24957 5' -52.8 NC_005284.1 + 18053 0.67 0.766826
Target:  5'- uCGACGCC-GAUC-CGgugGCggGCGCUGUg -3'
miRNA:   3'- -GCUGCGGaCUAGuGUa--UG--UGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 44901 0.67 0.766826
Target:  5'- uCGGCGCgCUGAgcUCcuGCuGUGCG-GCUGCCg -3'
miRNA:   3'- -GCUGCG-GACU--AG--UG-UAUGUgCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 19010 0.68 0.756455
Target:  5'- uGGCGUgUGGUCGC-UGCAgGCggcgaucGCCg -3'
miRNA:   3'- gCUGCGgACUAGUGuAUGUgCGa------CGG- -5'
24957 5' -52.8 NC_005284.1 + 9773 0.68 0.75541
Target:  5'- aCGGCGCaaGcUCACGUcgcaacgGCGCGC-GCCa -3'
miRNA:   3'- -GCUGCGgaCuAGUGUA-------UGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 26741 0.68 0.754364
Target:  5'- aCGGCGCCUucucccuucccaAUCACgGUGCugGCGCUGCa -3'
miRNA:   3'- -GCUGCGGAc-----------UAGUG-UAUG--UGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 11395 0.68 0.745952
Target:  5'- -cGCGCCUcGAcagCGCGggacuugACGCGCUGCg -3'
miRNA:   3'- gcUGCGGA-CUa--GUGUa------UGUGCGACGg -5'
24957 5' -52.8 NC_005284.1 + 14601 0.68 0.735331
Target:  5'- gGACGCCggaguUGGUCGCGacGCACGUgGCg -3'
miRNA:   3'- gCUGCGG-----ACUAGUGUa-UGUGCGaCGg -5'
24957 5' -52.8 NC_005284.1 + 9700 0.68 0.735331
Target:  5'- aCGGCGCUcGGcaacuUCACGaGCGCGUaGCCg -3'
miRNA:   3'- -GCUGCGGaCU-----AGUGUaUGUGCGaCGG- -5'
24957 5' -52.8 NC_005284.1 + 17697 0.68 0.724604
Target:  5'- gCGACGcCCUGAaucUCGCcgGCGCGUcgaugGCg -3'
miRNA:   3'- -GCUGC-GGACU---AGUGuaUGUGCGa----CGg -5'
24957 5' -52.8 NC_005284.1 + 40742 0.68 0.724604
Target:  5'- aGuACG-CUGAUCGgGUGCAUGCgauuuugGCCg -3'
miRNA:   3'- gC-UGCgGACUAGUgUAUGUGCGa------CGG- -5'
24957 5' -52.8 NC_005284.1 + 39001 0.68 0.724604
Target:  5'- nCGACGCaa---CGCAUGCGCGaguUGCCa -3'
miRNA:   3'- -GCUGCGgacuaGUGUAUGUGCg--ACGG- -5'
24957 5' -52.8 NC_005284.1 + 37559 0.68 0.713781
Target:  5'- -cACGCCgGAUUguuCGUcCAUGCUGCCu -3'
miRNA:   3'- gcUGCGGaCUAGu--GUAuGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 53725 0.68 0.713781
Target:  5'- aGcACGUCgGuagUACcgACGCGCUGCCg -3'
miRNA:   3'- gC-UGCGGaCua-GUGuaUGUGCGACGG- -5'
24957 5' -52.8 NC_005284.1 + 43444 0.69 0.702876
Target:  5'- gCGAcCGCCUcGAcgCGCAguUGCGCgauccGCUGCCg -3'
miRNA:   3'- -GCU-GCGGA-CUa-GUGU--AUGUG-----CGACGG- -5'
24957 5' -52.8 NC_005284.1 + 36070 0.69 0.702876
Target:  5'- uCGACGCCUG--CGgAUACGCGaaGUCg -3'
miRNA:   3'- -GCUGCGGACuaGUgUAUGUGCgaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.