miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24958 3' -55.5 NC_005284.1 + 49356 0.67 0.631996
Target:  5'- cCGAACu-AUCGGUCGCagcuUCGCCGAGc -3'
miRNA:   3'- -GCUUGcuUGGCUAGCGgc--AGCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 32868 0.67 0.631996
Target:  5'- uCGAucuCGcGCUGAucgUCGCCGgcgaCGCCGAAa -3'
miRNA:   3'- -GCUu--GCuUGGCU---AGCGGCa---GCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 36270 0.67 0.631996
Target:  5'- --uGCGuAUCGA-CGCCGUaCGCCGGAa -3'
miRNA:   3'- gcuUGCuUGGCUaGCGGCA-GCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 25515 0.68 0.621086
Target:  5'- cCGGugGAAUCGGagCgGCCGUCGUCGu- -3'
miRNA:   3'- -GCUugCUUGGCUa-G-CGGCAGCGGCuu -5'
24958 3' -55.5 NC_005284.1 + 52766 0.68 0.610185
Target:  5'- uGAugGAAUCGGccCGCCGuaaUCGCCGc- -3'
miRNA:   3'- gCUugCUUGGCUa-GCGGC---AGCGGCuu -5'
24958 3' -55.5 NC_005284.1 + 18660 0.68 0.599303
Target:  5'- gCGAACGGAgauCUGGUacaGCCGcaCGCCGAAu -3'
miRNA:   3'- -GCUUGCUU---GGCUAg--CGGCa-GCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 35374 0.68 0.57763
Target:  5'- aCGAACGGcgcGCCGAUcacgccugcacCGCCcUCGUCGAu -3'
miRNA:   3'- -GCUUGCU---UGGCUA-----------GCGGcAGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 5347 0.69 0.566856
Target:  5'- aGAGUG-GCCGGUCGagGUCGCCGGAu -3'
miRNA:   3'- gCUUGCuUGGCUAGCggCAGCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 42105 0.69 0.545471
Target:  5'- cCGuccGCGGcccGCUGGguguaGCCGUCGCCGAAc -3'
miRNA:   3'- -GCu--UGCU---UGGCUag---CGGCAGCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 45275 0.69 0.534875
Target:  5'- aCGAGCGcucGCCGggCGCCGacccacgcugUCGCCGc- -3'
miRNA:   3'- -GCUUGCu--UGGCuaGCGGC----------AGCGGCuu -5'
24958 3' -55.5 NC_005284.1 + 46889 0.69 0.534875
Target:  5'- aGAAC-AugCGGUCGCCGaCGUCGGc -3'
miRNA:   3'- gCUUGcUugGCUAGCGGCaGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 21197 0.69 0.534875
Target:  5'- cCGAuuGCGGAUCGGcuUCGCUGgugggUGCCGAAg -3'
miRNA:   3'- -GCU--UGCUUGGCU--AGCGGCa----GCGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 21642 0.69 0.534875
Target:  5'- cCGAGCagcGugCGAUCGCCG-CGCaCGAu -3'
miRNA:   3'- -GCUUGc--UugGCUAGCGGCaGCG-GCUu -5'
24958 3' -55.5 NC_005284.1 + 37709 0.69 0.524353
Target:  5'- uCGAACGucauACCGAcaagCGCCGUCaUCGGAu -3'
miRNA:   3'- -GCUUGCu---UGGCUa---GCGGCAGcGGCUU- -5'
24958 3' -55.5 NC_005284.1 + 38835 0.7 0.493288
Target:  5'- gCGAACGugagGCCGG-CGUCGcgCGCCGAc -3'
miRNA:   3'- -GCUUGCu---UGGCUaGCGGCa-GCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 7709 0.7 0.48312
Target:  5'- uGAGCGGugcGCCGAagcucgUGCCGcCGCCGGc -3'
miRNA:   3'- gCUUGCU---UGGCUa-----GCGGCaGCGGCUu -5'
24958 3' -55.5 NC_005284.1 + 47264 0.7 0.463095
Target:  5'- aCGGGCGAgaACCucguGAUCgacgGCCGUCGCCGc- -3'
miRNA:   3'- -GCUUGCU--UGG----CUAG----CGGCAGCGGCuu -5'
24958 3' -55.5 NC_005284.1 + 10961 0.7 0.463095
Target:  5'- cCGGACGAGCgGA-CGCaucaaGUCGCuCGAAa -3'
miRNA:   3'- -GCUUGCUUGgCUaGCGg----CAGCG-GCUU- -5'
24958 3' -55.5 NC_005284.1 + 46816 0.7 0.462105
Target:  5'- gCGAacuucucGCGAACCGccguuUCGUCGUCGCCc-- -3'
miRNA:   3'- -GCU-------UGCUUGGCu----AGCGGCAGCGGcuu -5'
24958 3' -55.5 NC_005284.1 + 16301 0.71 0.443514
Target:  5'- aGGGCGAGCCGGU-GCCGcUCGUCa-- -3'
miRNA:   3'- gCUUGCUUGGCUAgCGGC-AGCGGcuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.