Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24959 | 3' | -58.5 | NC_005284.1 | + | 6522 | 0.66 | 0.547118 |
Target: 5'- aGGCuccuCAGUGcccgcacGGCAacGCGCCGucAGCGUCa -3' miRNA: 3'- gCCGc---GUCAC-------CCGU--UGCGGC--UUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 51594 | 0.66 | 0.527277 |
Target: 5'- aGGcCGCA--GGGUGAaugucaaaaaGCCGAGCGUCu -3' miRNA: 3'- gCC-GCGUcaCCCGUUg---------CGGCUUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 36244 | 0.66 | 0.541872 |
Target: 5'- gCGGCGgAGUGGuuuucccggucaguuGCGuaucgacgccguACGCCGGaaucgACGUCa -3' miRNA: 3'- -GCCGCgUCACC---------------CGU------------UGCGGCU-----UGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 23603 | 0.66 | 0.558713 |
Target: 5'- uCGaCGCGGcGGGUuuugcucaugAGCGCCGAuauccgaccGCGUCa -3' miRNA: 3'- -GCcGCGUCaCCCG----------UUGCGGCU---------UGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 22248 | 0.66 | 0.548169 |
Target: 5'- aGGUguucGCGGgcgGGGCGGCGCUGuACuUCa -3' miRNA: 3'- gCCG----CGUCa--CCCGUUGCGGCuUGcAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 10932 | 0.66 | 0.548169 |
Target: 5'- -uGCGCAGgcccGCAugGCCGGccuCGUCg -3' miRNA: 3'- gcCGCGUCacc-CGUugCGGCUu--GCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 13298 | 0.66 | 0.547118 |
Target: 5'- uCGGaCGguGUGaagaacuGGCAcguCGCCGAGCG-Cg -3' miRNA: 3'- -GCC-GCguCAC-------CCGUu--GCGGCUUGCaG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 51291 | 0.66 | 0.537688 |
Target: 5'- aCGGCGCuuauucGGGCAAUGgagcucgagcCCGAGCuGUCc -3' miRNA: 3'- -GCCGCGuca---CCCGUUGC----------GGCUUG-CAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 12059 | 0.66 | 0.527277 |
Target: 5'- uCGGCGC-GUGcGGCGAUGUCucagguguucgGAGCGaUCg -3' miRNA: 3'- -GCCGCGuCAC-CCGUUGCGG-----------CUUGC-AG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 50831 | 0.67 | 0.466607 |
Target: 5'- uGGC-CGuUGGGUGGgGCCGGGCGUUu -3' miRNA: 3'- gCCGcGUcACCCGUUgCGGCUUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 17742 | 0.67 | 0.474495 |
Target: 5'- aGGCGCAGgcgcaccggcucGGGCGcugGCuGCUGcuGACGUCg -3' miRNA: 3'- gCCGCGUCa-----------CCCGU---UG-CGGC--UUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 7643 | 0.67 | 0.476478 |
Target: 5'- uGGUGCGucaguacacGUGGGCGGCGUCG---GUCa -3' miRNA: 3'- gCCGCGU---------CACCCGUUGCGGCuugCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 11567 | 0.67 | 0.48345 |
Target: 5'- gGaGCGCAGUGcGCAgaucgacgcggaGCucggcgacuacgcgGCCGAGCGUCa -3' miRNA: 3'- gC-CGCGUCACcCGU------------UG--------------CGGCUUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 45151 | 0.67 | 0.506689 |
Target: 5'- aGGCGUGGUcgacgcacGGCGACGUCGGGCa-- -3' miRNA: 3'- gCCGCGUCAc-------CCGUUGCGGCUUGcag -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 38832 | 0.67 | 0.486452 |
Target: 5'- aCGGCGaacGUGaGGCcggcgucgcGCGCCG-ACGUCa -3' miRNA: 3'- -GCCGCgu-CAC-CCGu--------UGCGGCuUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 44308 | 0.67 | 0.456842 |
Target: 5'- aCGGCGCAucgccaaacGUcGGCAccaugacacuuuGCGCCGcccGCGUCg -3' miRNA: 3'- -GCCGCGU---------CAcCCGU------------UGCGGCu--UGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 17391 | 0.67 | 0.496524 |
Target: 5'- uCGGUGUgaaGGUGcaacgcuacGGCGACGaCCGcGGCGUCa -3' miRNA: 3'- -GCCGCG---UCAC---------CCGUUGC-GGC-UUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 19228 | 0.67 | 0.496524 |
Target: 5'- uGGCGCAGUccu--ACGCCGAucugaacggacGCGUCg -3' miRNA: 3'- gCCGCGUCAcccguUGCGGCU-----------UGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 42256 | 0.68 | 0.418926 |
Target: 5'- aCGaGCGUu-UGGGCGaguguGCGCCGGuCGUCg -3' miRNA: 3'- -GC-CGCGucACCCGU-----UGCGGCUuGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 16146 | 0.68 | 0.418926 |
Target: 5'- -cGCGCAGccgugGGGCAcauCGCUGAuggggcucggcGCGUCg -3' miRNA: 3'- gcCGCGUCa----CCCGUu--GCGGCU-----------UGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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