Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24959 | 3' | -58.5 | NC_005284.1 | + | 30928 | 0.68 | 0.418926 |
Target: 5'- gGGCGCcGUGGcGCuuuCGCCGccGGCGaUCa -3' miRNA: 3'- gCCGCGuCACC-CGuu-GCGGC--UUGC-AG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 16146 | 0.68 | 0.418926 |
Target: 5'- -cGCGCAGccgugGGGCAcauCGCUGAuggggcucggcGCGUCg -3' miRNA: 3'- gcCGCGUCa----CCCGUu--GCGGCU-----------UGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 42256 | 0.68 | 0.418926 |
Target: 5'- aCGaGCGUu-UGGGCGaguguGCGCCGGuCGUCg -3' miRNA: 3'- -GC-CGCGucACCCGU-----UGCGGCUuGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 32806 | 0.68 | 0.400698 |
Target: 5'- -uGCGCGGguugcgGGGCGGCGUCGGuuACGg- -3' miRNA: 3'- gcCGCGUCa-----CCCGUUGCGGCU--UGCag -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 12282 | 0.69 | 0.391775 |
Target: 5'- gCGcCGCAGUGGuGUcGCaGCCGGGCGUg -3' miRNA: 3'- -GCcGCGUCACC-CGuUG-CGGCUUGCAg -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 40162 | 0.69 | 0.391775 |
Target: 5'- aCGGCGUcga-GGUAGCGCgCGAGCGUUc -3' miRNA: 3'- -GCCGCGucacCCGUUGCG-GCUUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 53954 | 0.69 | 0.388242 |
Target: 5'- cCGGCGCuugccGGUGcGCuuguugagccaGCCGAACGUCg -3' miRNA: 3'- -GCCGCG-----UCACcCGuug--------CGGCUUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 45970 | 0.69 | 0.373465 |
Target: 5'- uGGCGCAGcGuGGCGugGaCGAguggauuGCGUCa -3' miRNA: 3'- gCCGCGUCaC-CCGUugCgGCU-------UGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 4482 | 0.69 | 0.365797 |
Target: 5'- uGGCucGCGGcgGcGGUAGCGCCGAAC-UCg -3' miRNA: 3'- gCCG--CGUCa-C-CCGUUGCGGCUUGcAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 24237 | 0.69 | 0.34915 |
Target: 5'- gCGGUGUGGUGGGauuuAC-CCGAuCGUCa -3' miRNA: 3'- -GCCGCGUCACCCgu--UGcGGCUuGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 9500 | 0.7 | 0.309935 |
Target: 5'- gCGGCGaCAgcGUGGGuCGGCGCCcggcGAGCGcUCg -3' miRNA: 3'- -GCCGC-GU--CACCC-GUUGCGG----CUUGC-AG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 57 | 0.7 | 0.302506 |
Target: 5'- cCGGCGCauccgccgGGcGGGCAACGaCGGACGg- -3' miRNA: 3'- -GCCGCG--------UCaCCCGUUGCgGCUUGCag -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 46396 | 0.71 | 0.274165 |
Target: 5'- aGGUGaucacaUGGGCAACGCCGGAUG-Ca -3' miRNA: 3'- gCCGCguc---ACCCGUUGCGGCUUGCaG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 38077 | 0.71 | 0.26742 |
Target: 5'- uGGCGCAcccacGGC-GCGUCGGACGUCa -3' miRNA: 3'- gCCGCGUcac--CCGuUGCGGCUUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 14599 | 0.72 | 0.241779 |
Target: 5'- uCGGCGCgaaAGUGuucCGGCGCCGAACGcUCg -3' miRNA: 3'- -GCCGCG---UCACcc-GUUGCGGCUUGC-AG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 46322 | 0.72 | 0.235096 |
Target: 5'- uGGCGgA-UGGGCGACGCcCGAcugcaacACGUCg -3' miRNA: 3'- gCCGCgUcACCCGUUGCG-GCU-------UGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 33251 | 0.73 | 0.207192 |
Target: 5'- aGGCGCaccgccuccgcAGUGGGCGAUGCUGccgcGCGUg -3' miRNA: 3'- gCCGCG-----------UCACCCGUUGCGGCu---UGCAg -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 21377 | 0.74 | 0.191556 |
Target: 5'- uCGGcCGCAGUGGGUGACuGCUGGcgGUCg -3' miRNA: 3'- -GCC-GCGUCACCCGUUG-CGGCUugCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 30051 | 0.76 | 0.124609 |
Target: 5'- gGGUGUAGcGGGCcgaaGACGCaCGGGCGUCg -3' miRNA: 3'- gCCGCGUCaCCCG----UUGCG-GCUUGCAG- -5' |
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24959 | 3' | -58.5 | NC_005284.1 | + | 46587 | 1.08 | 0.000556 |
Target: 5'- gCGGCGCAGUGGGCAACGCCGAACGUCc -3' miRNA: 3'- -GCCGCGUCACCCGUUGCGGCUUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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