Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24960 | 5' | -55.3 | NC_005284.1 | + | 46862 | 1.06 | 0.001573 |
Target: 5'- aUUAUCGCCAACCGACCGGACCUUGCGc -3' miRNA: 3'- -AAUAGCGGUUGGCUGGCCUGGAACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 9998 | 0.77 | 0.171548 |
Target: 5'- -cGUCGCUGGCCGAgacggaCCGcGGCCUUGCGc -3' miRNA: 3'- aaUAGCGGUUGGCU------GGC-CUGGAACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 15286 | 0.73 | 0.329188 |
Target: 5'- ----aGCCGACCGACgaGGACCgcacgaugUGCGg -3' miRNA: 3'- aauagCGGUUGGCUGg-CCUGGa-------ACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 22071 | 0.71 | 0.407514 |
Target: 5'- ----gGCUAugCGGCCGGACUgcGCGa -3' miRNA: 3'- aauagCGGUugGCUGGCCUGGaaCGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 42123 | 0.71 | 0.426439 |
Target: 5'- gUGUaGCCGucGCCGaACUGGGCUUUGCGc -3' miRNA: 3'- aAUAgCGGU--UGGC-UGGCCUGGAACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 40310 | 0.7 | 0.465797 |
Target: 5'- ---cCGUagAGCCGACCGGuugcucCCUUGCGg -3' miRNA: 3'- aauaGCGg-UUGGCUGGCCu-----GGAACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 8334 | 0.7 | 0.465797 |
Target: 5'- -aAUCGCCGguugcagacgAUCGugCGGAUCUgcaUGCGg -3' miRNA: 3'- aaUAGCGGU----------UGGCugGCCUGGA---ACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 36780 | 0.69 | 0.486171 |
Target: 5'- gUGUCGCCGucgACCGACUuGACUgcGCGc -3' miRNA: 3'- aAUAGCGGU---UGGCUGGcCUGGaaCGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 11238 | 0.69 | 0.517493 |
Target: 5'- ----gGCgAAacCCGuCCGGACCUUGCGc -3' miRNA: 3'- aauagCGgUU--GGCuGGCCUGGAACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 6488 | 0.69 | 0.528114 |
Target: 5'- --cUCGCCGACCugcGugCGGAUuucgagaagCUUGCGa -3' miRNA: 3'- aauAGCGGUUGG---CugGCCUG---------GAACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 9372 | 0.68 | 0.549589 |
Target: 5'- aUAUCGUC-GCCGGCCGcGACU--GCGa -3' miRNA: 3'- aAUAGCGGuUGGCUGGC-CUGGaaCGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 2322 | 0.68 | 0.578985 |
Target: 5'- --uUCGCUGACCGACgGGAgCUUcugguccgcgugggGCGg -3' miRNA: 3'- aauAGCGGUUGGCUGgCCUgGAA--------------CGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 54120 | 0.68 | 0.582275 |
Target: 5'- -aAUCGCCAACuCGgaGCCGGuaGCCggGCu -3' miRNA: 3'- aaUAGCGGUUG-GC--UGGCC--UGGaaCGc -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 17878 | 0.68 | 0.582275 |
Target: 5'- ----gGCCGGCCG-CCGGAUCg-GCGg -3' miRNA: 3'- aauagCGGUUGGCuGGCCUGGaaCGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 30670 | 0.68 | 0.593265 |
Target: 5'- -cGUCGagCAGCCGGCCGGcggcuuUCUUGCc -3' miRNA: 3'- aaUAGCg-GUUGGCUGGCCu-----GGAACGc -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 47449 | 0.67 | 0.604288 |
Target: 5'- --cUCGCCGAUCaACCGGGCCgagaagaugGCu -3' miRNA: 3'- aauAGCGGUUGGcUGGCCUGGaa-------CGc -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 46351 | 0.67 | 0.626398 |
Target: 5'- -cGUCGCgGGCUcGCCGGACCaucucgGCa -3' miRNA: 3'- aaUAGCGgUUGGcUGGCCUGGaa----CGc -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 12547 | 0.67 | 0.637466 |
Target: 5'- ---aCGCCGGCaGGgCGGAaCCUUGUGg -3' miRNA: 3'- aauaGCGGUUGgCUgGCCU-GGAACGC- -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 23948 | 0.67 | 0.659575 |
Target: 5'- -gGUCGUCGACCG---GGGCUUUGCa -3' miRNA: 3'- aaUAGCGGUUGGCuggCCUGGAACGc -5' |
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24960 | 5' | -55.3 | NC_005284.1 | + | 7956 | 0.66 | 0.670597 |
Target: 5'- ----gGCCAucgaucAUCGAUCGGACCggGCGc -3' miRNA: 3'- aauagCGGU------UGGCUGGCCUGGaaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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