Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24961 | 5' | -54 | NC_005284.1 | + | 47175 | 1.09 | 0.001481 |
Target: 5'- gCGUACAUCAGGCGCCGAACCCGAAGAc -3' miRNA: 3'- -GCAUGUAGUCCGCGGCUUGGGCUUCU- -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 7809 | 0.73 | 0.376397 |
Target: 5'- gCGUGCAgc-GGUGCUGAACCCGcuGAc -3' miRNA: 3'- -GCAUGUaguCCGCGGCUUGGGCuuCU- -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 49149 | 0.7 | 0.577195 |
Target: 5'- gCGU-CGUCAaGGCGgaCGGGCCCGgcGAg -3' miRNA: 3'- -GCAuGUAGU-CCGCg-GCUUGGGCuuCU- -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 52922 | 0.7 | 0.577195 |
Target: 5'- aCGUggaACGgcaGGGCGCCGAAgCCGAuGGc -3' miRNA: 3'- -GCA---UGUag-UCCGCGGCUUgGGCUuCU- -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 31437 | 0.68 | 0.698108 |
Target: 5'- aCGUGCGccgcugCGGcGCGCCGGGCCCc---- -3' miRNA: 3'- -GCAUGUa-----GUC-CGCGGCUUGGGcuucu -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 39088 | 0.67 | 0.708929 |
Target: 5'- cCGUGCAUguGGUGCagGAauuGCCCGucaccGAGAu -3' miRNA: 3'- -GCAUGUAguCCGCGg-CU---UGGGC-----UUCU- -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 22371 | 0.67 | 0.730331 |
Target: 5'- uCGUGCGUCaguucaaauGGGCGCUGAcgaGCCgGcAGGu -3' miRNA: 3'- -GCAUGUAG---------UCCGCGGCU---UGGgCuUCU- -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 9202 | 0.67 | 0.730331 |
Target: 5'- uGUAUgugAUCAGGCGUCGAuAgCCGAGu- -3' miRNA: 3'- gCAUG---UAGUCCGCGGCU-UgGGCUUcu -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 47306 | 0.67 | 0.74089 |
Target: 5'- --cGgAUCGGGCaaGCCGAGCUCGGAu- -3' miRNA: 3'- gcaUgUAGUCCG--CGGCUUGGGCUUcu -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 29734 | 0.66 | 0.771856 |
Target: 5'- --cACGUCgGGGCGCCGAACagcaCCGGc-- -3' miRNA: 3'- gcaUGUAG-UCCGCGGCUUG----GGCUucu -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 26217 | 0.66 | 0.775893 |
Target: 5'- cCGUGCgggcguauugccugaGUCGGGUcucuCCGAGCgCGAGGAg -3' miRNA: 3'- -GCAUG---------------UAGUCCGc---GGCUUGgGCUUCU- -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 47217 | 0.66 | 0.785879 |
Target: 5'- gCGUGCA--GGGCgugcucgaGCCGGugcucuucuacaaagACCCGGAGAc -3' miRNA: 3'- -GCAUGUagUCCG--------CGGCU---------------UGGGCUUCU- -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 4555 | 0.66 | 0.791794 |
Target: 5'- cCGUucGCGUCAGGCuGCUGAACggCGAAu- -3' miRNA: 3'- -GCA--UGUAGUCCG-CGGCUUGg-GCUUcu -5' |
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24961 | 5' | -54 | NC_005284.1 | + | 30348 | 0.66 | 0.811061 |
Target: 5'- aCGUugAgaUCgAGGCGaUCGAGCgCGAGGGc -3' miRNA: 3'- -GCAugU--AG-UCCGC-GGCUUGgGCUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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