miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24962 3' -53.9 NC_005284.1 + 20719 0.66 0.814343
Target:  5'- -gGGCGGC-CGagGCGUauuUCCGAGCc -3'
miRNA:   3'- ugCUGCCGuGCg-UGUAgauAGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 53039 0.71 0.474039
Target:  5'- uACGACGGUuuucgguauuGCGCACAgUUUcUUCGGGCa -3'
miRNA:   3'- -UGCUGCCG----------UGCGUGU-AGAuAGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 27670 0.73 0.378417
Target:  5'- cGCGGCgGGCACGCGCAauugAUCCGucguuGCu -3'
miRNA:   3'- -UGCUG-CCGUGCGUGUaga-UAGGCu----CG- -5'
24962 3' -53.9 NC_005284.1 + 16947 0.76 0.261177
Target:  5'- cACGACGacucaccccauaGCACGCACAUUccggcguUCCGGGCg -3'
miRNA:   3'- -UGCUGC------------CGUGCGUGUAGau-----AGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 19578 0.66 0.785283
Target:  5'- -aGACGGCcCGCACGcgCUGUuuGcacguGCa -3'
miRNA:   3'- ugCUGCCGuGCGUGUa-GAUAggCu----CG- -5'
24962 3' -53.9 NC_005284.1 + 40279 0.67 0.754773
Target:  5'- gGCGAUGGCugcUGCGCGUCggaUGUCUGcucgaAGCc -3'
miRNA:   3'- -UGCUGCCGu--GCGUGUAG---AUAGGC-----UCG- -5'
24962 3' -53.9 NC_005284.1 + 39641 0.67 0.723123
Target:  5'- uGCGGCaGcGCACGUAUAUCUcgCCGcuCu -3'
miRNA:   3'- -UGCUG-C-CGUGCGUGUAGAuaGGCucG- -5'
24962 3' -53.9 NC_005284.1 + 13968 0.67 0.723123
Target:  5'- -gGACGGCACGCAauaguaaggCUGUgCgGAGUc -3'
miRNA:   3'- ugCUGCCGUGCGUgua------GAUA-GgCUCG- -5'
24962 3' -53.9 NC_005284.1 + 19351 0.68 0.690648
Target:  5'- gACGAacaaGGCugGCugacGCAUC---CCGAGCu -3'
miRNA:   3'- -UGCUg---CCGugCG----UGUAGauaGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 35866 0.71 0.474039
Target:  5'- uCGAuCGGCGCGCGCAgc--UCCGuGCc -3'
miRNA:   3'- uGCU-GCCGUGCGUGUagauAGGCuCG- -5'
24962 3' -53.9 NC_005284.1 + 1239 0.68 0.673099
Target:  5'- gACGACGGCGaa-ACAUCaGaacggccauagcaacUCCGGGCg -3'
miRNA:   3'- -UGCUGCCGUgcgUGUAGaU---------------AGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 907 0.67 0.712374
Target:  5'- gACGACGGC-CGCcGCAUCccggCCGcuguGCu -3'
miRNA:   3'- -UGCUGCCGuGCG-UGUAGaua-GGCu---CG- -5'
24962 3' -53.9 NC_005284.1 + 13148 0.66 0.804836
Target:  5'- gAUGACGGCGauUACAgCUcUCCGAuGCg -3'
miRNA:   3'- -UGCUGCCGUgcGUGUaGAuAGGCU-CG- -5'
24962 3' -53.9 NC_005284.1 + 32938 0.68 0.657659
Target:  5'- gGCGGCGGCaccaucgcccACGCcgGCGgcgCUGgaagcgCCGGGCa -3'
miRNA:   3'- -UGCUGCCG----------UGCG--UGUa--GAUa-----GGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 36276 0.66 0.785283
Target:  5'- uCGACGccGUACGCcggaaucgACGUCacgCCGAGCg -3'
miRNA:   3'- uGCUGC--CGUGCG--------UGUAGauaGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 23411 0.67 0.719907
Target:  5'- cGCGACGGCGCGU---UCUAUgcaauccacggccaCCGAcaGCg -3'
miRNA:   3'- -UGCUGCCGUGCGuguAGAUA--------------GGCU--CG- -5'
24962 3' -53.9 NC_005284.1 + 33133 0.7 0.566094
Target:  5'- cGCGGCGGCAucgugcgcggcgauCGCACGcugcUCggcgUCGAGCg -3'
miRNA:   3'- -UGCUGCCGU--------------GCGUGU----AGaua-GGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 53656 0.72 0.424625
Target:  5'- cACGAUGGCgACGCGcCGUCgc-CCGGGUu -3'
miRNA:   3'- -UGCUGCCG-UGCGU-GUAGauaGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 41625 0.66 0.785283
Target:  5'- uUGGCGGCACGgACGaCg---CGAGCg -3'
miRNA:   3'- uGCUGCCGUGCgUGUaGauagGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 4390 0.67 0.754773
Target:  5'- uCGAgUGGCACgGCACAacggUUUcgUCGAGCg -3'
miRNA:   3'- uGCU-GCCGUG-CGUGU----AGAuaGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.