Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24962 | 3' | -53.9 | NC_005284.1 | + | 13968 | 0.67 | 0.723123 |
Target: 5'- -gGACGGCACGCAauaguaaggCUGUgCgGAGUc -3' miRNA: 3'- ugCUGCCGUGCGUgua------GAUA-GgCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 39641 | 0.67 | 0.723123 |
Target: 5'- uGCGGCaGcGCACGUAUAUCUcgCCGcuCu -3' miRNA: 3'- -UGCUG-C-CGUGCGUGUAGAuaGGCucG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 23411 | 0.67 | 0.719907 |
Target: 5'- cGCGACGGCGCGU---UCUAUgcaauccacggccaCCGAcaGCg -3' miRNA: 3'- -UGCUGCCGUGCGuguAGAUA--------------GGCU--CG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 907 | 0.67 | 0.712374 |
Target: 5'- gACGACGGC-CGCcGCAUCccggCCGcuguGCu -3' miRNA: 3'- -UGCUGCCGuGCG-UGUAGaua-GGCu---CG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 33390 | 0.68 | 0.690648 |
Target: 5'- cCGACGGCuCGC-CAUCacccgAUUCGAGa -3' miRNA: 3'- uGCUGCCGuGCGuGUAGa----UAGGCUCg -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 5885 | 0.68 | 0.690648 |
Target: 5'- -aGGCGGCGCaGCgACAccuUCgccgCCGGGCg -3' miRNA: 3'- ugCUGCCGUG-CG-UGU---AGaua-GGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 9876 | 0.68 | 0.690648 |
Target: 5'- -aGACGGCAgcCGCACAgcaggagCuCGAGCg -3' miRNA: 3'- ugCUGCCGU--GCGUGUagaua--G-GCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 19351 | 0.68 | 0.690648 |
Target: 5'- gACGAacaaGGCugGCugacGCAUC---CCGAGCu -3' miRNA: 3'- -UGCUg---CCGugCG----UGUAGauaGGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 50826 | 0.68 | 0.679694 |
Target: 5'- uGCGAUGGC-CGUugGguggggCCGGGCg -3' miRNA: 3'- -UGCUGCCGuGCGugUagaua-GGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 6987 | 0.68 | 0.679694 |
Target: 5'- cGCGuacAUGGCGCGCucgACAUggcgCUcgCCGGGCu -3' miRNA: 3'- -UGC---UGCCGUGCG---UGUA----GAuaGGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 1239 | 0.68 | 0.673099 |
Target: 5'- gACGACGGCGaa-ACAUCaGaacggccauagcaacUCCGGGCg -3' miRNA: 3'- -UGCUGCCGUgcgUGUAGaU---------------AGGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 9790 | 0.68 | 0.668694 |
Target: 5'- cGCaACGGCGCGCGCcaacGUCg--CCG-GCa -3' miRNA: 3'- -UGcUGCCGUGCGUG----UAGauaGGCuCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 32938 | 0.68 | 0.657659 |
Target: 5'- gGCGGCGGCaccaucgcccACGCcgGCGgcgCUGgaagcgCCGGGCa -3' miRNA: 3'- -UGCUGCCG----------UGCG--UGUa--GAUa-----GGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 1696 | 0.69 | 0.635529 |
Target: 5'- gGCGGCGGCAUuacuucugcguuGCGCcgCgauUCUGGGUg -3' miRNA: 3'- -UGCUGCCGUG------------CGUGuaGau-AGGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 8724 | 0.69 | 0.624453 |
Target: 5'- gACG-CGGCGCGCAguUCgAUCCGcgaauacgcacaAGCc -3' miRNA: 3'- -UGCuGCCGUGCGUguAGaUAGGC------------UCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 10131 | 0.69 | 0.624453 |
Target: 5'- gGCGACGGCGCagacggcgcucGCGCGUa----CGGGCa -3' miRNA: 3'- -UGCUGCCGUG-----------CGUGUAgauagGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 41338 | 0.69 | 0.611173 |
Target: 5'- uCGGCGGCGCGUAucagguCAUCUGgccugcggaucgCCGAGa -3' miRNA: 3'- uGCUGCCGUGCGU------GUAGAUa-----------GGCUCg -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 1134 | 0.69 | 0.602333 |
Target: 5'- gGCGACGGCGCGuCGcCAUCgugcuccauUGUCgaugaguaccaCGAGCa -3' miRNA: 3'- -UGCUGCCGUGC-GU-GUAG---------AUAG-----------GCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 19804 | 0.69 | 0.599022 |
Target: 5'- cGCGGCGGCAgaucucuCGCGCGgggaaccguUCUGGGCa -3' miRNA: 3'- -UGCUGCCGU-------GCGUGUagau-----AGGCUCG- -5' |
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24962 | 3' | -53.9 | NC_005284.1 | + | 37700 | 0.69 | 0.591307 |
Target: 5'- aAUGGCGGgGCGCGCAUa----CGGGCc -3' miRNA: 3'- -UGCUGCCgUGCGUGUAgauagGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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