miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24962 5' -57.5 NC_005284.1 + 42922 0.67 0.521527
Target:  5'- -cGCUucaCGccGACGCGCCAGUCgGCCu -3'
miRNA:   3'- acCGAc--GCuuCUGCGCGGUUAG-CGGc -5'
24962 5' -57.5 NC_005284.1 + 14495 0.67 0.521527
Target:  5'- gGGCUuCGAGcagacauccGACGCGCagcagccAUCGCCGa -3'
miRNA:   3'- aCCGAcGCUU---------CUGCGCGgu-----UAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 5888 0.67 0.520484
Target:  5'- cGGCgcaGCGAcaccuucgccgccGGGCGUGuCCAcggCGCCGa -3'
miRNA:   3'- aCCGa--CGCU-------------UCUGCGC-GGUua-GCGGC- -5'
24962 5' -57.5 NC_005284.1 + 35871 0.68 0.490621
Target:  5'- cGGCgcGCGcAGcucCGUGCCAAgCGCCGa -3'
miRNA:   3'- aCCGa-CGCuUCu--GCGCGGUUaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 54698 0.68 0.490621
Target:  5'- cGGUUGCGguGACGUGgUggUgGCCc -3'
miRNA:   3'- aCCGACGCuuCUGCGCgGuuAgCGGc -5'
24962 5' -57.5 NC_005284.1 + 39405 0.68 0.480508
Target:  5'- cGGCU-CGAAuuCGCaCCAGUCGUCGa -3'
miRNA:   3'- aCCGAcGCUUcuGCGcGGUUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 38988 0.68 0.480508
Target:  5'- gGGCUGCGcgcuGGcgacgcaacgcAUGCGCgAGUUGCCa -3'
miRNA:   3'- aCCGACGCu---UC-----------UGCGCGgUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 9299 0.68 0.480508
Target:  5'- gGGCaGaCGAuGACGCGCCugcagacggaGAUCGUCa -3'
miRNA:   3'- aCCGaC-GCUuCUGCGCGG----------UUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 6942 0.68 0.480508
Target:  5'- cGGCgucgcacCGGAGAagGCGCCGG-CGCCGu -3'
miRNA:   3'- aCCGac-----GCUUCUg-CGCGGUUaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 6560 0.68 0.474488
Target:  5'- gUGGCuggUGCGAaggugauccgugacgAGGCGCGUaagCGcgCGCCGa -3'
miRNA:   3'- -ACCG---ACGCU---------------UCUGCGCG---GUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 26567 0.68 0.470497
Target:  5'- gUGGCcgGCGAgAGugGCGU---UCGCCa -3'
miRNA:   3'- -ACCGa-CGCU-UCugCGCGguuAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 10777 0.68 0.460593
Target:  5'- cGGCUGCuuucuGACGCGaaCAAcuucuUCGCCGg -3'
miRNA:   3'- aCCGACGcuu--CUGCGCg-GUU-----AGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 35593 0.68 0.460593
Target:  5'- cGcGCUGCGGAGACucagGCaGCCugucgacagCGCCGa -3'
miRNA:   3'- aC-CGACGCUUCUG----CG-CGGuua------GCGGC- -5'
24962 5' -57.5 NC_005284.1 + 38833 0.68 0.460593
Target:  5'- cGGCgaacGUGAGGcCgGCGUCGcgCGCCGa -3'
miRNA:   3'- aCCGa---CGCUUCuG-CGCGGUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 23503 0.68 0.460593
Target:  5'- gUGGC-GCGcGGACcuguucCGCCuGAUCGCCGa -3'
miRNA:   3'- -ACCGaCGCuUCUGc-----GCGG-UUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 31278 0.68 0.460593
Target:  5'- cGGCgaucagGCGGAacagguccGCGCGCCA--CGCCGg -3'
miRNA:   3'- aCCGa-----CGCUUc-------UGCGCGGUuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 45071 0.68 0.450801
Target:  5'- gGGCgagcGCGGcuACGCGCUcgugaAGUUGCCGa -3'
miRNA:   3'- aCCGa---CGCUucUGCGCGG-----UUAGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 22031 0.68 0.450801
Target:  5'- cGGCgUGCGugcgGGAacaCGCauGCCGGUCGCCu -3'
miRNA:   3'- aCCG-ACGCu---UCU---GCG--CGGUUAGCGGc -5'
24962 5' -57.5 NC_005284.1 + 16687 0.68 0.450801
Target:  5'- aGGCcgGCGucGGCGUGCCgcugacguccgAcgCGCCGu -3'
miRNA:   3'- aCCGa-CGCuuCUGCGCGG-----------UuaGCGGC- -5'
24962 5' -57.5 NC_005284.1 + 17584 0.68 0.450801
Target:  5'- cGGCaGCGAacgcaAGACGCGUuacaCGGUCGCg- -3'
miRNA:   3'- aCCGaCGCU-----UCUGCGCG----GUUAGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.