Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24963 | 3' | -64.2 | NC_005284.1 | + | 35117 | 0.66 | 0.268017 |
Target: 5'- cGCCCGauagGCGGCGUGUuCUGCGGa-- -3' miRNA: 3'- uUGGGCg---CGCCGCACGcGGCGCUcaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 2166 | 0.66 | 0.25897 |
Target: 5'- aGAUCCGUGCGGCGgcaaauucagcccGCGCucuuuggucaaCGCGAGa- -3' miRNA: 3'- -UUGGGCGCGCCGCa------------CGCG-----------GCGCUCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 45552 | 0.66 | 0.261529 |
Target: 5'- cGCCCGcCGCGcGCGUcaGCGCCucgaCGAGa- -3' miRNA: 3'- uUGGGC-GCGC-CGCA--CGCGGc---GCUCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 48897 | 0.66 | 0.268017 |
Target: 5'- cGCCCGCGgcgaaGGUGUcgcuGCGCCGCcucGAGa- -3' miRNA: 3'- uUGGGCGCg----CCGCA----CGCGGCG---CUCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 1685 | 0.66 | 0.257698 |
Target: 5'- cGACaucgaCGgGCGGCGgcauuacuucugcguUGCGCCGCGAu-- -3' miRNA: 3'- -UUGg----GCgCGCCGC---------------ACGCGGCGCUcaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 10652 | 0.66 | 0.248938 |
Target: 5'- aAGCgCUGCGCgaggaacuGGUGcGCGCCGCGGGc- -3' miRNA: 3'- -UUG-GGCGCG--------CCGCaCGCGGCGCUCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 18472 | 0.67 | 0.236852 |
Target: 5'- uACCuCGCGCGG-GUGCGCgC-CGAGa- -3' miRNA: 3'- uUGG-GCGCGCCgCACGCG-GcGCUCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 16687 | 0.67 | 0.210917 |
Target: 5'- aGGCCgGCGuCGGCGUGcCgcugacguccgacgcGCCGUGGGUg -3' miRNA: 3'- -UUGGgCGC-GCCGCAC-G---------------CGGCGCUCAa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 5404 | 0.67 | 0.225262 |
Target: 5'- uGCCCGUGCGGCGcgccagcucGCGCUcgGCGAa-- -3' miRNA: 3'- uUGGGCGCGCCGCa--------CGCGG--CGCUcaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 15491 | 0.68 | 0.182208 |
Target: 5'- cGCCgaGCGCGGCGUcGCGUuacccgacuucgagCGCGAGg- -3' miRNA: 3'- uUGGg-CGCGCCGCA-CGCG--------------GCGCUCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 45281 | 0.68 | 0.178931 |
Target: 5'- -cUCCGCGCGGC-UGCGCgGCauggcuGAGUa -3' miRNA: 3'- uuGGGCGCGCCGcACGCGgCG------CUCAa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 54733 | 0.7 | 0.141255 |
Target: 5'- uGCCCGCcCGGCGgaUGCGCCGgGuGg- -3' miRNA: 3'- uUGGGCGcGCCGC--ACGCGGCgCuCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 44703 | 0.7 | 0.145053 |
Target: 5'- aGACCCGcCGCGGuCGcgGuCGCCGCGcGUUc -3' miRNA: 3'- -UUGGGC-GCGCC-GCa-C-GCGGCGCuCAA- -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 24659 | 0.71 | 0.113705 |
Target: 5'- -uCgCGCGCGGCGUGCagucgacgugauaGCCGCGAa-- -3' miRNA: 3'- uuGgGCGCGCCGCACG-------------CGGCGCUcaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 9893 | 0.71 | 0.114012 |
Target: 5'- cGCCCggauaguugugaGCGaCGGCGUGCGCCGUaucGAGa- -3' miRNA: 3'- uUGGG------------CGC-GCCGCACGCGGCG---CUCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 43617 | 0.72 | 0.096888 |
Target: 5'- -uCCgCGCGCGGCGgccGCGgCGCGAGc- -3' miRNA: 3'- uuGG-GCGCGCCGCa--CGCgGCGCUCaa -5' |
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24963 | 3' | -64.2 | NC_005284.1 | + | 48753 | 1.03 | 0.000338 |
Target: 5'- cAACCCGCGCGGCGUGCGCCGCGAGUUg -3' miRNA: 3'- -UUGGGCGCGCCGCACGCGGCGCUCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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