miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24963 5' -53 NC_005284.1 + 44375 0.66 0.852396
Target:  5'- -cGACUGCGcGUC-AUCG-GCcGCCCGc -3'
miRNA:   3'- gcUUGACGC-UAGuUAGCuCGaCGGGC- -5'
24963 5' -53 NC_005284.1 + 22932 0.66 0.851538
Target:  5'- uCGGGCUGUucuGAUCGAUUGGcgcgcgcGUUGCUCGu -3'
miRNA:   3'- -GCUUGACG---CUAGUUAGCU-------CGACGGGC- -5'
24963 5' -53 NC_005284.1 + 49164 0.66 0.838387
Target:  5'- aCGGGCccgGCGAggCGAUggaggaaaugcugcgCGAgGCUGCCCGc -3'
miRNA:   3'- -GCUUGa--CGCUa-GUUA---------------GCU-CGACGGGC- -5'
24963 5' -53 NC_005284.1 + 48959 0.66 0.834793
Target:  5'- gCGGACUGC-AUCGAcgaagCGGuGCUGCgCGg -3'
miRNA:   3'- -GCUUGACGcUAGUUa----GCU-CGACGgGC- -5'
24963 5' -53 NC_005284.1 + 53158 0.66 0.810611
Target:  5'- uCGAGCuUGCGcgCcauGUCGAGCgcgagcacgcaaucuUGCCCc -3'
miRNA:   3'- -GCUUG-ACGCuaGu--UAGCUCG---------------ACGGGc -5'
24963 5' -53 NC_005284.1 + 51311 0.66 0.806771
Target:  5'- gGAGCU-CGAgcc--CGAGCUGUCCGa -3'
miRNA:   3'- gCUUGAcGCUaguuaGCUCGACGGGC- -5'
24963 5' -53 NC_005284.1 + 21391 0.66 0.806771
Target:  5'- -uGACUGCuggCGGUCGAguGCUGCCgGg -3'
miRNA:   3'- gcUUGACGcuaGUUAGCU--CGACGGgC- -5'
24963 5' -53 NC_005284.1 + 14836 0.67 0.797039
Target:  5'- aCGGaaGCUGcCGAccgugUCGGUCGAGUgGCUCGa -3'
miRNA:   3'- -GCU--UGAC-GCU-----AGUUAGCUCGaCGGGC- -5'
24963 5' -53 NC_005284.1 + 6893 0.67 0.78713
Target:  5'- gGAACUGCucgcgcauaGcgCGGUUGAGgUGCUCGa -3'
miRNA:   3'- gCUUGACG---------CuaGUUAGCUCgACGGGC- -5'
24963 5' -53 NC_005284.1 + 32981 0.67 0.774002
Target:  5'- aGGGCgGCGGUCAcucgcuccgcagcgGgCGAugcuGCUGCCCGg -3'
miRNA:   3'- gCUUGaCGCUAGU--------------UaGCU----CGACGGGC- -5'
24963 5' -53 NC_005284.1 + 11520 0.67 0.766826
Target:  5'- -----cGCGAcCuccUCGAGCUGCCCa -3'
miRNA:   3'- gcuugaCGCUaGuu-AGCUCGACGGGc -5'
24963 5' -53 NC_005284.1 + 44181 0.67 0.756455
Target:  5'- aCGAA--GCGGUCGAUC-AGUcGCCCGa -3'
miRNA:   3'- -GCUUgaCGCUAGUUAGcUCGaCGGGC- -5'
24963 5' -53 NC_005284.1 + 29470 0.68 0.745952
Target:  5'- aGGACUGCGGUUAaguaGUUGAcGCagggaacGCCCGa -3'
miRNA:   3'- gCUUGACGCUAGU----UAGCU-CGa------CGGGC- -5'
24963 5' -53 NC_005284.1 + 22749 0.69 0.6919
Target:  5'- cCGAgcgGCUGCGGUCGAUCaagGGGC-GCgCGa -3'
miRNA:   3'- -GCU---UGACGCUAGUUAG---CUCGaCGgGC- -5'
24963 5' -53 NC_005284.1 + 36910 0.69 0.690799
Target:  5'- gCGucGCUGCGAUCuuccguuGAUCGAGUucaugaccUGCUCGg -3'
miRNA:   3'- -GCu-UGACGCUAG-------UUAGCUCG--------ACGGGC- -5'
24963 5' -53 NC_005284.1 + 16922 0.69 0.680865
Target:  5'- uGAGCgcucGC-AUCgGAUCGAGCUGCCgCGc -3'
miRNA:   3'- gCUUGa---CGcUAG-UUAGCUCGACGG-GC- -5'
24963 5' -53 NC_005284.1 + 44249 0.69 0.647518
Target:  5'- gCGAuccagGCcgGCGAggaaUCGAUCGAgcGCUGCCUGa -3'
miRNA:   3'- -GCU-----UGa-CGCU----AGUUAGCU--CGACGGGC- -5'
24963 5' -53 NC_005284.1 + 4422 0.7 0.625195
Target:  5'- aCGAGCUGuUGAUCAAgcaGGGCgaacuccaaGCCCGu -3'
miRNA:   3'- -GCUUGAC-GCUAGUUag-CUCGa--------CGGGC- -5'
24963 5' -53 NC_005284.1 + 45121 0.7 0.580702
Target:  5'- gCGAcGCUGCGAUC-GUCGAGCUGa-UGg -3'
miRNA:   3'- -GCU-UGACGCUAGuUAGCUCGACggGC- -5'
24963 5' -53 NC_005284.1 + 23328 0.72 0.50482
Target:  5'- gCGGcACgGCGGUCAAUUGGGg-GCCCGg -3'
miRNA:   3'- -GCU-UGaCGCUAGUUAGCUCgaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.