Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24964 | 5' | -55.4 | NC_005284.1 | + | 12266 | 0.66 | 0.695958 |
Target: 5'- gGCGAGuucgugguccGCGcCGCAGuGGUGUCGCa-- -3' miRNA: 3'- gUGUUCu---------CGC-GCGUC-CCACAGUGacu -5' |
|||||||
24964 | 5' | -55.4 | NC_005284.1 | + | 7800 | 0.68 | 0.57443 |
Target: 5'- gACGAGccuGCGUGCAGcGGUGcugaaccCGCUGAc -3' miRNA: 3'- gUGUUCu--CGCGCGUC-CCACa------GUGACU- -5' |
|||||||
24964 | 5' | -55.4 | NC_005284.1 | + | 14182 | 0.69 | 0.477539 |
Target: 5'- gGCGAGAGCG-GCcccccaaAGGGgcggccGUCGCUGAc -3' miRNA: 3'- gUGUUCUCGCgCG-------UCCCa-----CAGUGACU- -5' |
|||||||
24964 | 5' | -55.4 | NC_005284.1 | + | 49060 | 1.08 | 0.000991 |
Target: 5'- gCACAAGAGCGCGCAGGGUGUCACUGAc -3' miRNA: 3'- -GUGUUCUCGCGCGUCCCACAGUGACU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home