miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24965 3' -60.4 NC_005284.1 + 26925 0.67 0.41707
Target:  5'- aUUUCGgCGAuGCGcCGGGCgGGCGuCGUc -3'
miRNA:   3'- cGAAGCgGCU-CGC-GCUCGaCCGC-GCG- -5'
24965 3' -60.4 NC_005284.1 + 11804 0.67 0.41707
Target:  5'- ----gGCCGAgGCG-GAGCaGGuCGCGCg -3'
miRNA:   3'- cgaagCGGCU-CGCgCUCGaCC-GCGCG- -5'
24965 3' -60.4 NC_005284.1 + 23038 0.67 0.41707
Target:  5'- aGCUcugCGCaGAGCGCuaucGCUGGCuGCGg -3'
miRNA:   3'- -CGAa--GCGgCUCGCGcu--CGACCG-CGCg -5'
24965 3' -60.4 NC_005284.1 + 11707 0.67 0.40894
Target:  5'- aGUUUCGCCGu-CGaCGGGacgaacugacgaagGGCGCGCg -3'
miRNA:   3'- -CGAAGCGGCucGC-GCUCga------------CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 9223 0.67 0.408043
Target:  5'- ----aGCCGAguGCGCGGGCga-CGCGCc -3'
miRNA:   3'- cgaagCGGCU--CGCGCUCGaccGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 1384 0.67 0.408043
Target:  5'- -aUUgGaCCGAuccGCGCGuGCUGGCGaaaGCc -3'
miRNA:   3'- cgAAgC-GGCU---CGCGCuCGACCGCg--CG- -5'
24965 3' -60.4 NC_005284.1 + 47790 0.67 0.407147
Target:  5'- cGC-UCGCgGAgGCGaCGGGCgagcgcuUGGCgGCGCu -3'
miRNA:   3'- -CGaAGCGgCU-CGC-GCUCG-------ACCG-CGCG- -5'
24965 3' -60.4 NC_005284.1 + 37037 0.67 0.399139
Target:  5'- aGCa--GCC-AGCGCccGAGCcGGUGCGCc -3'
miRNA:   3'- -CGaagCGGcUCGCG--CUCGaCCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 25669 0.67 0.399139
Target:  5'- gGCgcaGCCGuucGCGCGAGCcaagccucuGCGUGCa -3'
miRNA:   3'- -CGaagCGGCu--CGCGCUCGac-------CGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 4782 0.67 0.39036
Target:  5'- aGCgguacgUCGUgGGGCGCGAGCcuucGaUGCGCu -3'
miRNA:   3'- -CGa-----AGCGgCUCGCGCUCGa---CcGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 34792 0.67 0.385154
Target:  5'- aGCUUCGCCGAccucgucauagGCGCGgucgccgaucauaucGaucacgucGUUGGCGuCGCa -3'
miRNA:   3'- -CGAAGCGGCU-----------CGCGC---------------U--------CGACCGC-GCG- -5'
24965 3' -60.4 NC_005284.1 + 19388 0.67 0.379138
Target:  5'- -aUUCGCCGugaucgacgagggcGGUGCaGGCgugaucGGCGCGCc -3'
miRNA:   3'- cgAAGCGGC--------------UCGCGcUCGa-----CCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 45883 0.67 0.373186
Target:  5'- gGCUgucgCGUCGAGCGguuGCcgUGGuCGCGCg -3'
miRNA:   3'- -CGAa---GCGGCUCGCgcuCG--ACC-GCGCG- -5'
24965 3' -60.4 NC_005284.1 + 1004 0.67 0.373186
Target:  5'- cUUUCGCCcGGCGCG-GCUgauGGUgaaGCGCu -3'
miRNA:   3'- cGAAGCGGcUCGCGCuCGA---CCG---CGCG- -5'
24965 3' -60.4 NC_005284.1 + 42023 0.67 0.373186
Target:  5'- uCUUCG-CGAGCGCGuGCcGGCcgaGCg -3'
miRNA:   3'- cGAAGCgGCUCGCGCuCGaCCGcg-CG- -5'
24965 3' -60.4 NC_005284.1 + 12375 0.67 0.372341
Target:  5'- gGC-UCGUUggcggGAGCGCGGgaggaggggauucGCcGGCGCGCa -3'
miRNA:   3'- -CGaAGCGG-----CUCGCGCU-------------CGaCCGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 18890 0.68 0.368135
Target:  5'- aUUUCGCCgGccagaucgggaagucGGCGCuuggcacgGAGCUGcGCGCGCc -3'
miRNA:   3'- cGAAGCGG-C---------------UCGCG--------CUCGAC-CGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 34900 0.68 0.364794
Target:  5'- --aUCGCCGAcaGCGAGCUcGuCGUGCa -3'
miRNA:   3'- cgaAGCGGCUcgCGCUCGAcC-GCGCG- -5'
24965 3' -60.4 NC_005284.1 + 43529 0.68 0.364794
Target:  5'- cCUUCGCC--GCGCGAgccGCUGcCGCGUu -3'
miRNA:   3'- cGAAGCGGcuCGCGCU---CGACcGCGCG- -5'
24965 3' -60.4 NC_005284.1 + 4461 0.68 0.364794
Target:  5'- uGCUggagGCCGAGCaaaAGCUGGCuCGCg -3'
miRNA:   3'- -CGAag--CGGCUCGcgcUCGACCGcGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.