miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24965 5' -52 NC_005284.1 + 49407 1.07 0.002667
Target:  5'- cAAGCAGCCGAACUCCGAAUUCGACGAa -3'
miRNA:   3'- -UUCGUCGGCUUGAGGCUUAAGCUGCU- -5'
24965 5' -52 NC_005284.1 + 44026 0.73 0.474607
Target:  5'- aAAGCAGCCGAACgCCc---UCGGCGGc -3'
miRNA:   3'- -UUCGUCGGCUUGaGGcuuaAGCUGCU- -5'
24965 5' -52 NC_005284.1 + 23416 0.72 0.528017
Target:  5'- uGGguGUugaUGAAUUUCGAGUUCGACGAc -3'
miRNA:   3'- uUCguCG---GCUUGAGGCUUAAGCUGCU- -5'
24965 5' -52 NC_005284.1 + 22996 0.71 0.594762
Target:  5'- cGAGcCAGCCGGagccgcGCUCCGAgg-UGACGGa -3'
miRNA:   3'- -UUC-GUCGGCU------UGAGGCUuaaGCUGCU- -5'
24965 5' -52 NC_005284.1 + 50087 0.7 0.617374
Target:  5'- cGAGCAGCCGAACagcaUCGAGaacguaacgCGGCGAu -3'
miRNA:   3'- -UUCGUCGGCUUGa---GGCUUaa-------GCUGCU- -5'
24965 5' -52 NC_005284.1 + 10414 0.7 0.625306
Target:  5'- cGGGCGGCCGAugACgcgcagucggcauaUCgGAAUUUGGCGAc -3'
miRNA:   3'- -UUCGUCGGCU--UG--------------AGgCUUAAGCUGCU- -5'
24965 5' -52 NC_005284.1 + 11629 0.7 0.651368
Target:  5'- -uGCAGCgCGAACUCgGGGcgaugUCGAUGGg -3'
miRNA:   3'- uuCGUCG-GCUUGAGgCUUa----AGCUGCU- -5'
24965 5' -52 NC_005284.1 + 50295 0.69 0.685191
Target:  5'- cAAGCGGCCGAcCgucgCCGAggguucgaaguAUUUGGCGGc -3'
miRNA:   3'- -UUCGUCGGCUuGa---GGCU-----------UAAGCUGCU- -5'
24965 5' -52 NC_005284.1 + 20718 0.69 0.691907
Target:  5'- gGGGCGGCCGAGgcguauUUCCGAGccgcgaagccagCGACGAu -3'
miRNA:   3'- -UUCGUCGGCUU------GAGGCUUaa----------GCUGCU- -5'
24965 5' -52 NC_005284.1 + 46596 0.69 0.696373
Target:  5'- uGGGCAacGCCGAACgucCCGAg--CGGCGGg -3'
miRNA:   3'- -UUCGU--CGGCUUGa--GGCUuaaGCUGCU- -5'
24965 5' -52 NC_005284.1 + 43207 0.69 0.729476
Target:  5'- uAGUcGCCGAGCUCCGcg-UCGAUc- -3'
miRNA:   3'- uUCGuCGGCUUGAGGCuuaAGCUGcu -5'
24965 5' -52 NC_005284.1 + 18677 0.69 0.729476
Target:  5'- --aCAGCCGcACgCCGAAUcgCGACGAc -3'
miRNA:   3'- uucGUCGGCuUGaGGCUUAa-GCUGCU- -5'
24965 5' -52 NC_005284.1 + 22076 0.68 0.74032
Target:  5'- -uGCGGCCGGACUgCG----CGACGGa -3'
miRNA:   3'- uuCGUCGGCUUGAgGCuuaaGCUGCU- -5'
24965 5' -52 NC_005284.1 + 3719 0.68 0.74032
Target:  5'- aGAGCGGCCGGGCguugCCG-GUUCuGugGc -3'
miRNA:   3'- -UUCGUCGGCUUGa---GGCuUAAG-CugCu -5'
24965 5' -52 NC_005284.1 + 47311 0.68 0.761649
Target:  5'- cGGGCAaGCCGAGCUCgGAuuccuuUUCGucgcucGCGAa -3'
miRNA:   3'- -UUCGU-CGGCUUGAGgCUu-----AAGC------UGCU- -5'
24965 5' -52 NC_005284.1 + 18852 0.68 0.761649
Target:  5'- gGGGCAGCCGAGCa-CGGAUcaaagCGACu- -3'
miRNA:   3'- -UUCGUCGGCUUGagGCUUAa----GCUGcu -5'
24965 5' -52 NC_005284.1 + 177 0.68 0.772108
Target:  5'- cGAGCcGCCGGACU--GGAUugUCGGCGAg -3'
miRNA:   3'- -UUCGuCGGCUUGAggCUUA--AGCUGCU- -5'
24965 5' -52 NC_005284.1 + 37077 0.68 0.782414
Target:  5'- -uGCAGCCGAACgccgugaccUCCGuc-UUGAUGAc -3'
miRNA:   3'- uuCGUCGGCUUG---------AGGCuuaAGCUGCU- -5'
24965 5' -52 NC_005284.1 + 12252 0.67 0.792555
Target:  5'- -cGCAGCuuuCGAACggCGAGUUCGugGu -3'
miRNA:   3'- uuCGUCG---GCUUGagGCUUAAGCugCu -5'
24965 5' -52 NC_005284.1 + 16672 0.67 0.802518
Target:  5'- cGGCcGUCGAGCgugaggCCGGcgUCGGCGu -3'
miRNA:   3'- uUCGuCGGCUUGa-----GGCUuaAGCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.