miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24966 3' -53.5 NC_005284.1 + 7780 0.66 0.798956
Target:  5'- cUCGCCgaGCAAGAGuGacaauugcgaccGCagCUUGGAGCg -3'
miRNA:   3'- cAGCGG--CGUUCUCuC------------CGa-GAACUUCG- -5'
24966 3' -53.5 NC_005284.1 + 30276 0.66 0.778876
Target:  5'- uUCGCUGUc-GAGuGGCUCgcgcgauacggUUGAGGCc -3'
miRNA:   3'- cAGCGGCGuuCUCuCCGAG-----------AACUUCG- -5'
24966 3' -53.5 NC_005284.1 + 4259 0.66 0.768591
Target:  5'- uUCgGCCGCAAGAGcGGCggcgacUCgcacccGGAGCa -3'
miRNA:   3'- cAG-CGGCGUUCUCuCCG------AGaa----CUUCG- -5'
24966 3' -53.5 NC_005284.1 + 10732 0.66 0.762349
Target:  5'- cUCGCCGCAauggaugcugcggcaAGGGGGGC-CgccGAGGg -3'
miRNA:   3'- cAGCGGCGU---------------UCUCUCCGaGaa-CUUCg -5'
24966 3' -53.5 NC_005284.1 + 53567 0.67 0.736905
Target:  5'- cGUCGuCCGCAcuGGGGGCg--UGcGGCu -3'
miRNA:   3'- -CAGC-GGCGUucUCUCCGagaACuUCG- -5'
24966 3' -53.5 NC_005284.1 + 35414 0.68 0.693171
Target:  5'- cUCGUCGCAgaGGGGAaGCUCggGAuGCg -3'
miRNA:   3'- cAGCGGCGU--UCUCUcCGAGaaCUuCG- -5'
24966 3' -53.5 NC_005284.1 + 22129 0.68 0.682054
Target:  5'- -cCGCCgauGCGGGAGAGGCggcagCgUGgcGCu -3'
miRNA:   3'- caGCGG---CGUUCUCUCCGa----GaACuuCG- -5'
24966 3' -53.5 NC_005284.1 + 41814 0.68 0.641702
Target:  5'- uGUCGCCGCcacuuccgcuGGGuGGCUCgcccaagacgauuuuUUGAAGUa -3'
miRNA:   3'- -CAGCGGCGuu--------CUCuCCGAG---------------AACUUCG- -5'
24966 3' -53.5 NC_005284.1 + 4350 0.7 0.547885
Target:  5'- -cCGCCgGCGAGAaGGcGCUCgcUGAAGCa -3'
miRNA:   3'- caGCGG-CGUUCUcUC-CGAGa-ACUUCG- -5'
24966 3' -53.5 NC_005284.1 + 22258 0.7 0.536943
Target:  5'- -cCGCCGCGAGGGuGGCgagCcUGAcgaacagccAGCg -3'
miRNA:   3'- caGCGGCGUUCUCuCCGa--GaACU---------UCG- -5'
24966 3' -53.5 NC_005284.1 + 12362 0.77 0.208264
Target:  5'- uUCGCCGCGGGuG-GGCUCguuggcgGGAGCg -3'
miRNA:   3'- cAGCGGCGUUCuCuCCGAGaa-----CUUCG- -5'
24966 3' -53.5 NC_005284.1 + 50061 1.13 0.00072
Target:  5'- aGUCGCCGCAAGAGAGGCUCUUGAAGCg -3'
miRNA:   3'- -CAGCGGCGUUCUCUCCGAGAACUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.