miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24967 5' -57.1 NC_005284.1 + 21779 0.68 0.445278
Target:  5'- cGGCUGCGcgUCGCUGUccgacacugcaCGGCAGCCg- -3'
miRNA:   3'- -UCGGCGUa-AGCGGCAa----------GUCGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 54521 0.69 0.425925
Target:  5'- aGGCagCGCAUcuugCGCCGcgaCAGCGGCCUc -3'
miRNA:   3'- -UCG--GCGUAa---GCGGCaa-GUCGUCGGAc -5'
24967 5' -57.1 NC_005284.1 + 15964 0.69 0.425925
Target:  5'- cGGCCcaCGUUCGCCGUguUCAaCGGCCg- -3'
miRNA:   3'- -UCGGc-GUAAGCGGCA--AGUcGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 4690 0.69 0.397857
Target:  5'- cGCCGCGUUacguucucgaUGCUGUUCGGCuGCUc- -3'
miRNA:   3'- uCGGCGUAA----------GCGGCAAGUCGuCGGac -5'
24967 5' -57.1 NC_005284.1 + 35597 0.69 0.397857
Target:  5'- cGGCCGCGUU-GUCGUUCAcCuucGCCUGu -3'
miRNA:   3'- -UCGGCGUAAgCGGCAAGUcGu--CGGAC- -5'
24967 5' -57.1 NC_005284.1 + 41413 0.69 0.397857
Target:  5'- cGCCGCAgacagaUCGCCGcccaccgUCAGCuuGCCg- -3'
miRNA:   3'- uCGGCGUa-----AGCGGCa------AGUCGu-CGGac -5'
24967 5' -57.1 NC_005284.1 + 33479 0.7 0.362333
Target:  5'- cGcCCGCAUugaaccgccUCGCCGUUguGCuGCCg- -3'
miRNA:   3'- uC-GGCGUA---------AGCGGCAAguCGuCGGac -5'
24967 5' -57.1 NC_005284.1 + 14965 0.7 0.345415
Target:  5'- --aCGCg--CGCCGUUCGGCGGCUUc -3'
miRNA:   3'- ucgGCGuaaGCGGCAAGUCGUCGGAc -5'
24967 5' -57.1 NC_005284.1 + 42796 0.71 0.305642
Target:  5'- cGCCgGCAUUCuaCGUgauagCAGCGGCCa- -3'
miRNA:   3'- uCGG-CGUAAGcgGCAa----GUCGUCGGac -5'
24967 5' -57.1 NC_005284.1 + 46223 0.73 0.242458
Target:  5'- cGGUCGUAUUCGCCGUaacgcugacgaUCAGCucgcgaaGGCUUGu -3'
miRNA:   3'- -UCGGCGUAAGCGGCA-----------AGUCG-------UCGGAC- -5'
24967 5' -57.1 NC_005284.1 + 4111 0.75 0.171899
Target:  5'- uGGCCGCGguuaUCGCCaaUC-GCGGCCUGa -3'
miRNA:   3'- -UCGGCGUa---AGCGGcaAGuCGUCGGAC- -5'
24967 5' -57.1 NC_005284.1 + 50221 1.08 0.000597
Target:  5'- aAGCCGCAUUCGCCGUUCAGCAGCCUGa -3'
miRNA:   3'- -UCGGCGUAAGCGGCAAGUCGUCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.