miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24968 3' -55.4 NC_005284.1 + 16699 0.67 0.645186
Target:  5'- --cUCGCGUcuucgucCGCGCGACGAgccacaUCGGCa -3'
miRNA:   3'- cuuAGUGCGc------GCGCGCUGCU------AGUCGa -5'
24968 3' -55.4 NC_005284.1 + 47059 0.67 0.634152
Target:  5'- gGAGUUACGC-CGCcgGCGGCGGcacgagcuUCGGCg -3'
miRNA:   3'- -CUUAGUGCGcGCG--CGCUGCU--------AGUCGa -5'
24968 3' -55.4 NC_005284.1 + 50757 0.67 0.612089
Target:  5'- cAAUC-CGcCGUGCGCGAUGAUCGa-- -3'
miRNA:   3'- cUUAGuGC-GCGCGCGCUGCUAGUcga -5'
24968 3' -55.4 NC_005284.1 + 12058 0.68 0.601079
Target:  5'- --uUCG-GCGCGUGCGGCGAugucUCAGgUg -3'
miRNA:   3'- cuuAGUgCGCGCGCGCUGCU----AGUCgA- -5'
24968 3' -55.4 NC_005284.1 + 9595 0.68 0.590096
Target:  5'- cGAUCGCGCuGC-CGCGGCGGcgaAGCUu -3'
miRNA:   3'- cUUAGUGCG-CGcGCGCUGCUag-UCGA- -5'
24968 3' -55.4 NC_005284.1 + 31265 0.68 0.590096
Target:  5'- aGGUUugGCGUGU-CGGCGAUCAgGCg -3'
miRNA:   3'- cUUAGugCGCGCGcGCUGCUAGU-CGa -5'
24968 3' -55.4 NC_005284.1 + 45953 0.68 0.579149
Target:  5'- cGAUCugGUcaCGCGUGACGAUCcgaaGGCg -3'
miRNA:   3'- cUUAGugCGc-GCGCGCUGCUAG----UCGa -5'
24968 3' -55.4 NC_005284.1 + 27122 0.68 0.579149
Target:  5'- cAAUUGCGCGUGCccgccGCGACGcAUCuGCg -3'
miRNA:   3'- cUUAGUGCGCGCG-----CGCUGC-UAGuCGa -5'
24968 3' -55.4 NC_005284.1 + 33132 0.68 0.578056
Target:  5'- ---aCGCGgcggcauCGUGCGCGGCGAUCGcacGCUg -3'
miRNA:   3'- cuuaGUGC-------GCGCGCGCUGCUAGU---CGA- -5'
24968 3' -55.4 NC_005284.1 + 12133 0.68 0.572601
Target:  5'- -cGUCgGCGCGCucgguggugcggcaaGCGCGGCuGUCGGCUc -3'
miRNA:   3'- cuUAG-UGCGCG---------------CGCGCUGcUAGUCGA- -5'
24968 3' -55.4 NC_005284.1 + 19333 0.68 0.568245
Target:  5'- ---cCGCGCGagauccaGCGCGACGAacaaGGCUg -3'
miRNA:   3'- cuuaGUGCGCg------CGCGCUGCUag--UCGA- -5'
24968 3' -55.4 NC_005284.1 + 21622 0.68 0.557393
Target:  5'- --cUCGCGCGcCGCGCucGACGccgagCAGCg -3'
miRNA:   3'- cuuAGUGCGC-GCGCG--CUGCua---GUCGa -5'
24968 3' -55.4 NC_005284.1 + 45898 0.68 0.546602
Target:  5'- cGGUUGCcgugguCGCGCGCGAUGcgCAGCa -3'
miRNA:   3'- cUUAGUGc-----GCGCGCGCUGCuaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 48811 0.68 0.546602
Target:  5'- cGAAUCGCauCGUuCGCGACGAUCGGa- -3'
miRNA:   3'- -CUUAGUGc-GCGcGCGCUGCUAGUCga -5'
24968 3' -55.4 NC_005284.1 + 38071 0.68 0.545527
Target:  5'- uGGAUUugGCGCacccacgGCGCGuCGGacgUCAGCg -3'
miRNA:   3'- -CUUAGugCGCG-------CGCGCuGCU---AGUCGa -5'
24968 3' -55.4 NC_005284.1 + 38886 0.69 0.535878
Target:  5'- gGAAUCagcaccgauaGCGCGCGCaccgccucugcgGCGACGAgaCGGCa -3'
miRNA:   3'- -CUUAG----------UGCGCGCG------------CGCUGCUa-GUCGa -5'
24968 3' -55.4 NC_005284.1 + 29256 0.69 0.514661
Target:  5'- aGAGcgACGCGCGCaCGACGA-CGGCc -3'
miRNA:   3'- -CUUagUGCGCGCGcGCUGCUaGUCGa -5'
24968 3' -55.4 NC_005284.1 + 7992 0.69 0.514661
Target:  5'- --uUCGCGCGCGCGaguGACGA-CGcGCa -3'
miRNA:   3'- cuuAGUGCGCGCGCg--CUGCUaGU-CGa -5'
24968 3' -55.4 NC_005284.1 + 43618 0.69 0.514661
Target:  5'- ---cCGCGCGCGgcggcCGCGGCGcgagcugcGUCAGCa -3'
miRNA:   3'- cuuaGUGCGCGC-----GCGCUGC--------UAGUCGa -5'
24968 3' -55.4 NC_005284.1 + 15670 0.69 0.514661
Target:  5'- cGAAUCACGCGgGCGUGuaucUCGGUg -3'
miRNA:   3'- -CUUAGUGCGCgCGCGCugcuAGUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.